WDRR: WD40 Repeat Recognition
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| JobID: P2IPE1506560563 Submitted: 2017-09-28 09:02:43 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 232690404 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = fbw7 (Len=707) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (fbw7, Len=707): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNQELLSVGSKRRRTGGSLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQNDSQQGQLEEN 80
WD40-rpts
Query 81 NNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVHQLSSP 160
WD40-rpts
Query 161 FYTKTTKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKM 240
WD40-rpts
Query 241 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 320
WD40-rpts
Query 321 WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDD 400
WD40-rpts (________________WD 1__________
Query 401 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 480
WD40-rpts ______) (________________WD 2_______________) (________________WD 3_________
Query 481 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 560
WD40-rpts ______) (________________WD 4_______________) (________________WD 5_________
Query 561 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 640
WD40-rpts ______) (________________WD 6_______________) (_________________WD 7________
Query 641 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 707
WD40-rpts _________) (_____________________WD 8_____________________)
 8 WD40-repeats found in QUERY=fbw7 (Len=707): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 370-407 7.01 404.10 0.00022 37.5% 47.86 WD 2: Seg 8 411-447 9.04 487.96 1.6e-05 50.0% 54.31 WD 3: Seg 12 451-487 8.99 486.07 1.7e-05 52.5% 51.81 WD 4: Seg 16 491-527 8.93 483.73 1.9e-05 47.5% 54.03 WD 5: Seg 20 531-567 8.80 478.00 2.2e-05 52.5% 53.18 WD 6: Seg 24 571-607 8.36 460.11 3.9e-05 40.0% 55.02 WD 7: Seg 28 611-650 7.16 410.25 0.00018 45.0% 54.05 WD 8: Seg 32 654-701 4.85 314.87 0.00355 32.5% 54.99Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 370-407 LKSPKVL-----KG---HDDHVITC-LQFCGNRIVSGSDDNT----LKVWS WD 2 411-447 GKCLRTL-----VG---HTGGVWSSQMRDN--IIISGSTDRT----LKVWN WD 3 451-487 GECIHTL-----YG---HTSTVRCMHLHE--KRVVSGSRDAT----LRVWD WD 4 491-527 GQCLHVL-----MG---HVAAVRCVQY--DGRRVVSGAYDFM----VKVWD WD 5 531-567 ETCLHTL-----QG---HTNRVYSLQF--DGIHVVSGSLDTS----IRVWD WD 6 571-607 GNCIHTL-----TG---HQSLTSGMELKDN--ILVSGNADST----VKIWD WD 7 611-650 GQCLQTL-----QGPNKHQSAVTCLQFNKN--FVITSSDDGT----VKLWD WD 8 654-701 GEFIRNLVTLESGG---SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD WD40 Template GECLRTL-----SG---HTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD |
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