Input parameters:

  Query = CmaCh01G001300 (Len=892)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G001300, Len=892):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNYRFQNLLGAPYRGGNVLISEDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFIN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 LRRRVVLHRMFFKKLVSVVKFSSDGAFIAVGIGKLVQIWRSPGFKKEFFPFELVRTFADCNDKVTALDWSPDGNYLLAGS 160 
WD40-rpts        (________________WD 3________________)          (_________________WD 4________

Query      161 KDLTVRLLYVKKISGIKYKPHLFLGHRDSIVGSFFGTNKKTNKVVKAYTITRDCYIFSWGITENNLDEMEVDNLEPASPG 240 
WD40-rpts      ________)            (_________________WD 5________________)   (________________

Query      241 TPSRDSEGNVESGGDVSVKKRKNFGDGKADDEAEYLLREKWELVRKDCFSQAPAKVTACDYHRYLDMVVVGFSNGTFGLY 320 
WD40-rpts      _WD 6________________)                 (__________________WD 7__________________

Query      321 QMPDFVCLHMLSITREKITTAIFNQHGNWLSFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 400 
WD40-rpts      )   (_________________WD 8_________________)   (_________________WD 9___________

Query      401 KVKVWTVQSGFCFVTFSEHSNAITALHFLANNHCLLSASLDGTVRAWDLFRYRNFRTFTSPNSRQFVSLAVDQSGEVVCA 480 
WD40-rpts      _____)   (_________________WD10________________)    (_________________WD11______

Query      481 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLMFSPTNAVLASSSWDKTVRLWDVFEGKGAVETFNHMHDVLTVVYRPDG 560 
WD40-rpts      ___________)   (_________________WD12________________)   (_________________WD13_

Query      561 RQLASSTLDGQIHFWDPIDGILMYTIEGRRDIAGGRLMTDRRSAATSSSGKCFTTLCYSADGSYILAGGCSKFICMYDIA 640 
WD40-rpts      _______________)           (_______________________WD14______________________)  

Query      641 DQVLLRRFQITHNLSLDGVLDVLNSKNMTEAGPIDLIDDDDSDVEEGVDQQTREKLGHDLPGSMLNRGRPIVRTKCLRIA 720 
WD40-rpts                (________________WD15________________)     (____________________WD16__

Query      721 PTGRNFAASTTEGVLVYSIDESFIFDPTDLDIDVTPEAINAALDEDQPSRALILSLRLNEDDLIKKCIFSVNVVDIAKLI 800 
WD40-rpts      _________________)                                                              

Query      801 QSIPHRYLQRLVEALAELLESCPHLEFVLRWCQELCKIHGNYIQQNSRNLLPALKSLQMAITRTHQDLADMCSSNEYLLR 880 
WD40-rpts                                                                                      

Query      881 YLCSTSTKKGTT 892 
WD40-rpts                  

16 WD40-repeats found in QUERY=CmaCh01G001300 (Len=892):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.98  320.47  0.00298       22.5%     35.11
  WD 2:  Seg  4    42-80       6.42  379.76  0.00047       17.5%     57.88
  WD 3:  Seg  8    83-120      5.32  334.38  0.00194       20.0%     53.64
  WD 4:  Seg 12   131-169      8.11  449.63  5.4e-05       35.0%     56.74
  WD 5:  Seg 16   182-220      5.23  330.85  0.00216       17.5%     47.97
  WD 6:  Seg 19   224-262      6.41  379.26  0.00048       12.5%     41.25
  WD 7:  Seg 23   280-321      6.88  398.90  0.00026       22.5%     53.99
  WD 8:  Seg 27   325-364      6.64  389.14  0.00035       30.0%     57.73
  WD 9:  Seg 31   368-406      9.23  495.93  1.3e-05       30.0%     57.34
  WD10:  Seg 35   410-448      9.86  522.01  5.7e-06       37.5%     56.88
  WD11:  Seg 39   453-492      5.24  331.12  0.00214       20.0%     58.05
  WD12:  Seg 43   496-534     10.00  527.66  4.8e-06       42.5%     55.51
  WD13:  Seg 47   538-576      8.58  468.97  3.0e-05       35.0%     57.83
  WD14:  Seg 52   588-638      5.34  335.17  0.00189       20.0%     46.96
  WD15:  Seg 56   651-688      5.46  340.14  0.00162       15.0%     34.65
  WD16:  Seg 60   694-738      3.74  269.13  0.01461       15.0%     47.90

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MNYRF-----------Q--NLLGAPYR-------GGNVLISEDT-------LLISPVG-N-RISVTD
   WD 2   42-80     -SQTA-----------T--LPVQSSSN-------ICRIAVSPDGA-----FLFTVDEK-N-RCLFIN
   WD 3   83-120    -RRVV-----------L--HRMFFKKL-------VSVVKFSSDGA-----FIAVGI-G-K-LVQIWR
   WD 4  131-169    -FELV-----------R--TFADCNDK-------VTALDWSPDGN-----YLLAGSKD-L-TVRLLY
   WD 5  182-220    -------------------LFLGHRDS-------IVGSFFGTNKKTNKVVKAYTITRD-C-YIFSWG
   WD 6  224-262    -NNLD-----------E--MEVDNLEP-------ASPGTPSRDSE-----GNVESGGD-V-SVKKRK
   WD 7  280-321    KWELV-----------RKDCFSQAPAK-------VTACDYHRYLD-----MVVVGFSN-G-TFGLYQ
   WD 8  325-364    -FVCL-----------H--MLSITREK-------ITTAIFNQHGN-----WLSFGCAKLG-QLLVWE
   WD 9  368-406    -ESYI-----------L--KQQGHYFD-------VNCLAYSPDSQ-----LLATGADD-N-KVKVWT
   WD10  410-448    -GFCF-----------V--TFSEHSNA-------ITALHFLANNH-----CLLSASLD-G-TVRAWD
   WD11  453-492    -RNFR-----------T--FTSPNSRQ-------FVSLAVDQSGE-----VVCAGTLD-SFEIFVWS
   WD12  496-534    -GRLL-----------D--ILSGHEGP-------VHGLMFSPTNA-----VLASSSWD-K-TVRLWD
   WD13  538-576    -GKGA-----------V--ETFNHMHD-------VLTVVYRPDGR-----QLASSTLD-G-QIHFWD
   WD14  588-638    GRRDIAGGRLMTDRRSA--ATSSSGKC-------FTTLCYSADGS-----YILAGGCS-K-FICMYD
   WD15  651-688    THNL---------------SLDGVLDV-------LNSKNMTEAGP-----IDLIDDDD-S-DVEEGV
   WD16  694-738    -EKLG-----------H--DLPGSMLNRGRPIVRTKCLRIAPTGR-----NFAASTTE-G--VLVYS

   WD40 Template    TGECL-----------R--TLSGHTSG-------VTSVSFSPDGK-----RLVSGSED-G-TIKVWD