WDRR: WD40 Repeat Recognition
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| JobID: OST7Y1659505065 Submitted: 2022-08-03 13:37:45 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747444 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh18G003480 (Len=952) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh18G003480, Len=952): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAKRGYKLQEIAAHSANVNCLSIGKKACRLFITGGDDHKVNLWAIGKPNSLMSLCGHTNPVESVAFDSSEVLVLAGASSG 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2_____________
Query 81 AIKLWDLEEAKIVRTLSGHRSNCTAVEFHPFGEFFASGSRDTNLKIWDIRKKGCSHTYKGHTQGISTIKFTPDGRWVVSG 160
WD40-rpts _____) (_________________WD 3________________) (_________________WD 4_______
Query 161 GFDSAVKVWDLTAGKLLHDFKFHEGHIRSIGFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEATGVRAITFHPNGRI 240
WD40-rpts _________) (_________________WD 5________________) (________________WD 6____
Query 241 LLSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHDGKLLSCSFYRSSVGVWVADISNIEPYGASSVSGQKEPKEQKSN 320
WD40-rpts ____________) (________________WD 7________________) (_________________W
Query 321 SAFKNSLASKSFGAALMTSNLQSLSPDYETKEIKNIYIDTTGGKPEAESLSSPKVVFALGSREIIYDASKKQSPASRAET 400
WD40-rpts D 8________________) (_______________WD 9_______________) (______________
Query 401 KSIEVSTVKPPVIPCDSPEVKDSASSVRESITFSKTRRGMLLRPAHVRKPSNSKMDLEKLSVSVDSSRKTDLERLAIVDS 480
WD40-rpts ___WD10_________________)
Query 481 VNICHTTNDLNKASEPNFVTRVVSEETQKDSHRTNSDIRSIETFENIPHVSSETTSEQESCNKPVVSRKGTNSVKFVNGV 560
WD40-rpts
Query 561 AVVPGRTRTLVEKFERREQTIDVQTTISPSYVLESEKTKEQTNSYEAQVVTPQILETEKSHEQVNTYGIQAVAIPSHVSE 640
WD40-rpts
Query 641 TEKARERTNNYKMQAVTIPSHISETEKARERTNNYEMQAVIIPSRISETEKARERTNNYEVRAMITPRTPETKRMTTDYE 720
WD40-rpts
Query 721 ARTRNNDEKMTTPVTSLVPETDRTDNLQKGEPQASGRDSPCANDRDVIEDIMQSHDVFLSSLRSRLTKLQVVRHFWQQND 800
WD40-rpts
Query 801 MKGAINAMTKLPDHSVQADVISVLIEKMNVLTLDLFSCLLPILVGLLDSKIERHASLSMEILLKLVAVFGHVITSAVSAP 880
WD40-rpts
Query 881 PVVGVDLHAEQRVLCCKQCFTHLQKIQKLLPSFARKGGSLARSAQELNLKELGDATPLQVEAISHVPQFCDS 952
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh18G003480 (Len=952): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 4-44 7.59 428.07 0.00011 22.5% 54.52 WD 2: Seg 5 45-86 9.44 504.45 9.9e-06 40.0% 56.09 WD 3: Seg 9 90-128 10.59 551.98 2.3e-06 47.5% 56.91 WD 4: Seg 13 132-170 10.63 553.79 2.1e-06 45.0% 55.68 WD 5: Seg 17 174-212 9.25 496.89 1.2e-05 35.0% 54.85 WD 6: Seg 21 216-253 7.14 409.41 0.00019 30.0% 56.54 WD 7: Seg 25 257-294 5.38 337.03 0.00179 20.0% 57.78 WD 8: Seg 29 302-340 6.96 402.16 0.00024 17.5% 45.12 WD 9: Seg 32 348-383 5.78 353.51 0.00107 10.0% 12.50 WD10: Seg 34 386-425 7.29 415.71 0.00016 5.0% 16.48Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 4-44 RG--YKLQEIAAHSANVNCLSIGKKACRLFITGGDDHKVNLWA WD 2 45-86 IGKPNSLMSLCGHTNPVESVAFDSSEVL-VLAGASSGAIKLWD WD 3 90-128 -A--KIVRTLSGHRSNCTAVEFHPFGEF-FASGSRDTNLKIWD WD 4 132-170 -K--GCSHTYKGHTQGISTIKFTPDGRW-VVSGGFDSAVKVWD WD 5 174-212 -G--KLLHDFKFHEGHIRSIGFHPLEFL-LATGSADKTVKFWD WD 6 216-253 -F--ELIGSTRPEATGVRAITFHPNGRI-LLSGL-DESLKVYS WD 7 257-294 -V--ICHDSVDMGWSTLGDLCIH-DGKL-LSCSFYRSSVGVWV WD 8 302-340 -P--YGASSVSGQKEPKEQKSNSAFKNS-LASKSFGAALMTSN WD 9 348-383 ------YETKEIKNIYIDTTGGKPEAES-LSSPKVVFALGSRE WD10 386-425 YD--ASKKQSPASRAETKSIEVSTVKPP-VIPCDSPEVKDSAS WD40 Template TG--ECLRTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD |
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