JobID: ORYOG1659461327 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh04G018590 (Len=740)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G018590, Len=740):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLNLDAESSPQATRPKKKHGRKNSHLKPSKSHAEKQNSDELHLEQEAPTADEAPLQQHLDSASLSDSKEDVSDEFKDLK 80  
WD40-rpts                                                                                      

Query       81 LSKARESGSADEDHVNTGSPDNLDQENEDDNPIRDQVDEESDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDISGKKILKK 160 
WD40-rpts                                                                                      

Query      161 EREDKLQSFLASADDSKSWRKLYDEYNDEVIELSKEEVKQLRRLLKGKAPHADFDPYAPYVDWFKWDDAKHPLSNAPEPK 240 
WD40-rpts                                                                                      

Query      241 RRFIRSKWEAKKVVQLVRAIRNGHIKFDKPKEEQRFYHLWGDDSSSTEKTAHLSYIPAPKPKFPGHDESYNPSLEYIPTQ 320 
WD40-rpts                                                                                      

Query      321 EEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPYPTTC 400 
WD40-rpts                                            (_________________WD 1________________)   

Query      401 YLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPLPELPILAAAVGVDVLLLNTG 480 
WD40-rpts         (______________WD 2_____________)   (_________________WD 3________________)(_

Query      481 FGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRGVVIHQLS 560 
WD40-rpts      ______________WD 4_______________)  (__________________WD 5__________________)  

Query      561 RKLTQKIPFKLHGLPVSSIFHPTRSIFFVSTKKNVRVYDLLKQKLMKKLETGLREVSSIAVHPAGDNVIVGSREGKVCWF 640 
WD40-rpts       (________________WD 6________________)   (_________________WD 7________________

Query      641 DMDLSSQPYKILSCHPKDVTNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLTQNPLIRPLEILRGHKATNGRGVMDCKFH 720 
WD40-rpts      )    (_________________WD 8________________)            (___________________WD 9

Query      721 PRQPWLFTAGADSVIKLYCH 740 
WD40-rpts      __________________)

9 WD40-repeats found in QUERY=CmaCh04G018590 (Len=740):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   359-397      2.87  233.40  0.04365        7.5%      9.17
  WD 2:  Seg  9   404-436      8.26  455.85  4.5e-05       32.5%     47.11
  WD 3:  Seg 12   440-478      3.13  243.93  0.03167       15.0%     53.65
  WD 4:  Seg 16   479-514      3.99  279.40  0.01064       15.0%     24.51
  WD 5:  Seg 18   517-558      4.35  294.39  0.00669       17.5%     50.10
  WD 6:  Seg 22   562-599      2.90  234.44  0.04228       15.0%     52.05
  WD 7:  Seg 26   603-641      7.09  407.66  0.00020       22.5%     55.63
  WD 8:  Seg 30   646-684      7.42  421.14  0.00013       30.0%     55.65
  WD 9:  Seg 34   697-739      5.27  332.34  0.00207       30.0%     49.71

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  359-397    FERCLDLYLCPRV----RKKRINIDPES-L-KPK---LPSRKDLRPYP
   WD 2  404-436    -------FRGHKD----AVMSISTEANGQW-IAS---GSLDGTVRIWE
   WD 3  440-478    -GRCLKVWELG-E----AVKYVAWNPLPELPILA---AAVGVDVLLLN
   WD 4  479-514    TGFGDGEVQAKVK----EL----LHIDALP-ATD---NSDKTPIATWL
   WD 5  517-558    -DKVEGIRLRHFK----TVSSVEWHRKGDY-LSTVMPAGESRGVVIHQ
   WD 6  562-599    -KLTQKIPFKLHG----LPVSSIFHPTRS--IFF---VSTKKNVRVYD
   WD 7  603-641    -QKLMKKLETGLR----EVSSIAVHPAGDN-VIV---GSREGKVCWFD
   WD 8  646-684    -SQPYKILSCHPK----DVTNVAFHRSYPL-FAS---CSDDCTAYVFH
   WD 9  697-739    -IRPLEILRGHKATNGRGVMDCKFHPRQPW-LFT---AGADSVIKLYC

   WD40 Template    TGECLRTLSGHTS----GVTSVSFSPDGKR-LVS---GSEDGTIKVWD