Input parameters:

  Query = sp_Q09866_YAG1_SCHPO (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q09866_YAG1_SCHPO, Len=905):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLNRSKKRNGCYFWVNGSSDEIRYVAVKASPKVNWKTHIIWRSLKNVKCIDSFHGNNEILGAGSSTGNISLLSVKHPEFQ 80  
WD40-rpts                                        (_________________WD 1________________)(______

Query       81 AVVTPGYARPCNSLAFSETEHLVAGFAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTLDGVSSVCYKKDTPLLLTGSTSR 160 
WD40-rpts      ______________WD 2____________________)            (_______________WD 3_________

Query      161 SVHIIDTRQQLDSVSSVNTQYYSNIVVDPFSPNYFAANSYDGDIAIFDTRYFKSDNYLQIILRNENKKPKNPQLFALKYS 240 
WD40-rpts      _____)(__________________WD 4__________________)               (________________

Query      241 EWKPGQLAVLSNNSITLRQLLPCVNGNEGSANNSVFVNYEKKYPVKPNSQCSGIDFFTPSTAFPTHVQILGVINEQPKLF 320 
WD40-rpts      WD 5_______________)                                                     (______

Query      321 SVHDEVIPFSFNPYNDLIFSFKEKLYPLNSSPFNTLSDVPQFDVSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHE 400 
WD40-rpts      __________WD 6________________)                                                 

Query      401 VLLSYNRVLGSDIQGTILDRVKKGYQFDSQKNSELVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQGALGIWFMD 480 
WD40-rpts                                                                                      

Query      481 TELTSMSDVFEAKESKFLEKKILRLARDVIERLDLDIFTSIQTKRPLRQLALLACGLGMSNDDLLLEIRRLIRKNEHVKA 560 
WD40-rpts                                                                                      

Query      561 AGLALFHGKIENVVRILSSGNELEKTISTAVAGYITSQGLSNFGSDSLWKEMSRNLSTELEDPYLRAIFAYVSNSDWRDV 640 
WD40-rpts                                                                                      

Query      641 LDEVSLSLKDRLGIALRFLPDDDLSNYLCDLCHTTVQSGDPEGLLLTGLTPLGMELLQNYIDHTSDVQTAALIAAFVVPK 720 
WD40-rpts                                                                                      

Query      721 KFLDKRAEDWTESYRELLNRWKLYRERAKFDIFRTELSKNHTGEITRKATEPSIRIICNFCRKPIFPFSNRNECNNLPTP 800 
WD40-rpts                                                                                      

Query      801 IQRGVSKAGPAKHLGKSCPHCGQPLPKCSVCGFSLGDEDVPQKDDFSQKPQNYVKEVNLQKSRFGLWFSFCLNCGHGAHA 880 
WD40-rpts                                                                                      

Query      881 SHASEWFSTHTICPVPNCDCECKLK 905 
WD40-rpts                               

6 WD40-repeats found in QUERY=sp_Q09866_YAG1_SCHPO (Len=905):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-73       5.06  323.50  0.00272       17.5%     56.78
  WD 2:  Seg  7    74-119      4.92  317.84  0.00324       17.5%     42.00
  WD 3:  Seg 11   132-166      5.98  361.66  0.00083       25.0%     51.23
  WD 4:  Seg 14   167-208      5.92  359.13  0.00090       25.0%     50.33
  WD 5:  Seg 19   224-260      3.63  264.46  0.01687        7.5%     39.60
  WD 6:  Seg 24   314-351      3.77  270.25  0.01411       17.5%     24.53

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-73     -WK---TH-IIWRSLKNVKCIDSFHG-NNE-I---LGAGSSTGNISLLS
   WD 2   74-119    VKHPEFQA-VVTPGYARPCNSLAFSE-TEH-LVAGFAKSRNESSLKLWD
   WD 3  132-166    ---------LMQSSTLDGVSSVCYKK-DTP-L---LLTGSTSRSVHIID
   WD 4  167-208    TRQ---QLDSVSSVNTQYYSNIVVDPFSPN-Y---FAANSYDGDIAIFD
   WD 5  224-260    -------N-ENKKPKNPQLFALKYSE-WKPGQ---LAVLSNNSITLRQL
   WD 6  314-351    NEQ------PKLFSVHDEVIPFSFNP-YND-L---IFSFKEKLYPLNSS

   WD40 Template    TGE---CL-RTLSGHTSGVTSVSFSP-DGK-R---LVSGSEDGTIKVWD