WDRR: WD40 Repeat Recognition
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| JobID: OP2HK1659519839 Submitted: 2022-08-03 17:43:59 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79729490 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G041720 (Len=480) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G041720, Len=480): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKGGTLQISWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQTSLSYHGSAVNSLRFSPSGEQLA 80
WD40-rpts (_________________WD 1_________________) (_______________WD 2____
Query 81 SGADGGELIIWKLHHVESGQSWKVLKTLSFHRKDVLDLQWSHDGAYLISGSVDNSCIIWDVSKGSVQQILDAHLHYVQGV 160
WD40-rpts ___________) (_________________WD 3________________) (________________
Query 161 ALDPLGKYAASLSSDRSCRIYAYKPPTKVKNSEKMTYVCQHVITKAENVAVDDSKSARNHLFHDETLPSFFRRLAWSPDG 240
WD40-rpts _WD 4________________) (_________________WD 5________________)(_____________WD
Query 241 SFLLVPAGISKMSPASEPVNTAYIFSRKDLSRPAIQLPGASKPVVAVCFCPKLFKLRGLNSAGFFKLPHRVIFAVATLNS 320
WD40-rpts 6_____________) (_________________WD 7________________)
Query 321 LYIYDTESAVPLAIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGLPFALSVDVEDQIGTTTDQNMSLTD 400
WD40-rpts (_________________WD 8_________________) (_____________WD 9____________)
Query 401 VTINDDENRRIEAEGKHEENKSVEKPENMVIEKASSGDNLVESDNRGHEIEKASKQVSISSSSNSVKPAKRRITPMAIDP 480
WD40-rpts (________________WD10________________)
 10 WD40-repeats found in QUERY=CsaV3_6G041720 (Len=480): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 2-41 9.36 501.25 1.1e-05 27.5% 56.36 WD 2: Seg 5 57-92 9.29 498.52 1.2e-05 37.5% 47.96 WD 3: Seg 8 102-140 9.51 507.67 8.9e-06 40.0% 55.28 WD 4: Seg 12 144-182 9.09 490.29 1.5e-05 27.5% 52.63 WD 5: Seg 16 186-224 6.67 390.25 0.00034 7.5% 38.02 WD 6: Seg 20 225-256 4.93 318.31 0.00319 15.0% 26.95 WD 7: Seg 22 271-309 5.73 351.37 0.00114 22.5% 17.41 WD 8: Seg 26 329-368 7.86 439.53 7.4e-05 27.5% 58.68 WD 9: Seg 30 370-400 4.33 293.46 0.00689 12.5% 44.43 WD10: Seg 33 407-444 5.19 329.00 0.00229 15.0% 35.71Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2-41 KGGTLQISWH-DSKPVLTLDFHPISGLLATGGADFDIKLWL WD 2 57-92 ----QTSLSY-HGSAVNSLRFSPSGEQLASGADGGELIIWK WD 3 102-140 -WKVLKTLSF-HRKDVLDLQWSHDGAYLISGSVDNSCIIWD WD 4 144-182 -GSVQQILDA-HLHYVQGVALDPLGKYAASLSSDRSCRIYA WD 5 186-224 -PTKVKNSEK-MTYVCQHVITKAENVAVDDSKSARNHLFHD WD 6 225-256 --------ET-LPSFFRRLAWSPDGSFLLVPAGISKMSPAS WD 7 271-309 -SRPAIQLPG-ASKPVVAVCFCPKLFKLRGLNSAGFFKLPH WD 8 329-368 -AVPLAIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVE WD 9 370-400 ENDEL----------GLPFALSVDVEDQIGTTTDQNMSLTD WD10 407-444 -ENRRIEAEG-KHEENKSVE-KPENMVIEKASSGDNLVESD WD40 Template TGECLRTLSG-HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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