Input parameters:

  Query = CmaCh11G005500 (Len=352)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G005500, Len=352):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDKKRVAIPLVCHGHSRPVVDLCYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATGS 80  
WD40-rpts          (___________________WD 1__________________)   (_________________WD 2________

Query       81 ADFSAKVWDALTGDVLHSFEHKHIVRACAFSEDTHLLLTGGLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDMGGVRLWDVRSGQIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240 
WD40-rpts      _____________)   (________________WD 5_______________)(__________________WD 6___

Query      241 MKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCLRFAPGGESYASGSEDGTIRIWQTGPLTHDDSDEALVNGSVGKVK 320 
WD40-rpts      _______________)   (_________________WD 7________________)(_______________WD 8__

Query      321 VSADEVSRKIEGFNIADEGKTREKEKEETGNE 352 
WD40-rpts      _____________)                  

8 WD40-repeats found in QUERY=CmaCh11G005500 (Len=352):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-47       8.08  448.51  5.6e-05       27.5%     52.58
  WD 2:  Seg  5    51-89       9.97  526.44  5.0e-06       35.0%     55.44
  WD 3:  Seg  9    93-130      8.03  446.38  6.0e-05       25.0%     55.20
  WD 4:  Seg 13   131-174      6.84  397.35  0.00027       22.5%     50.88
  WD 5:  Seg 17   178-214      7.20  412.26  0.00017       35.0%     53.66
  WD 6:  Seg 21   215-256      6.21  371.20  0.00062       30.0%     55.99
  WD 7:  Seg 25   260-298     10.27  539.03  3.4e-06       40.0%     57.99
  WD 8:  Seg 29   299-334      4.07  282.78  0.00959       22.5%     35.26

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-47     RVA---IPLVCHGHSRPVVDLCYSPVTPD-GFFLISASK-DSNPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSCCLDT---N-ALRAATGSA-DFSAKVWD
   WD 3   93-130    -GD---VLHSF-EHKHIVRACAFSE---D-THLLLTGGL-EKVLRIYD
   WD 4  131-174    LNRPDAPPREVDKSPGSVRTVTWLH--SD-QTILSSCTD-MGGVRLWD
   WD 5  178-214    -GQ---IVQTLETKSS-VTSAEVSQ---D-GRYITTAD--GSTVKFWD
   WD 6  215-256    ANH--FGLVKSYNMPCTVESASLEP---KYGMKFIAGGE-DMWIHVFD
   WD 7  260-298    -GD---EIACNKGHHGPVHCLRFAP---G-GESYASGSE-DGTIRIWQ
   WD 8  299-334    TGP---LT-----HDDSDEALVNGS---V-GKVKVSADEVSRKIEGFN

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP---D-GKRLVSGSE-DGTIKVWD