WDRR: WD40 Repeat Recognition
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| JobID: OMNDG1541107043 Submitted: 2018-11-02 05:17:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 198145240 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = wdr (Len=459) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (wdr, Len=459): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLEL 80
WD40-rpts (___________WD 1___________) (________________WD 2________________) (______
Query 81 NGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVWNR 160
WD40-rpts ______________WD 3____________________) (________________WD 4_______________)
Query 161 KLDLLCKTSHLSDTGISALVEIPKNCVVAAVGKELIIFRLVAPTEGSLEWDILEVKRLLDHQDNILSLINVNDLSFVTGS 240
WD40-rpts (_________________WD 5_________________) (________________WD 6________
Query 241 HVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQKSNDISIHHFTCDEENVFAAVGRGLYVYSLQMKRVIACQKT 320
WD40-rpts ________) (________________WD 7________________) (_______
Query 321 AHDSNVLHVARLPNRQLISCSEDGSVRIWELREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKKQQENATSCSLELIGD 400
WD40-rpts _________WD 8________________) (________________WD 9________________) (_____
Query 401 LIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERESGLRSLRLFQKLEENGDLYLAV 459
WD40-rpts ___________WD10________________)
 10 WD40-repeats found in QUERY=wdr (Len=459): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-28 3.48 258.57 0.02022 10.0% 18.76 WD 2: Seg 2 33-70 6.35 376.79 0.00052 27.5% 53.79 WD 3: Seg 6 74-119 8.39 461.12 3.8e-05 37.5% 57.14 WD 4: Seg 10 123-159 6.59 386.74 0.00038 20.0% 54.61 WD 5: Seg 14 163-202 6.40 379.02 0.00049 10.0% 56.13 WD 6: Seg 18 212-249 7.10 407.91 0.00020 25.0% 49.84 WD 7: Seg 23 271-308 5.64 347.80 0.00128 10.0% 54.20 WD 8: Seg 27 313-350 7.14 409.57 0.00019 30.0% 55.06 WD 9: Seg 31 354-391 4.79 312.68 0.00380 12.5% 22.68 WD10: Seg 34 395-432 7.80 436.81 8.1e-05 32.5% 52.00Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-28 ML------------RWLIGGGRE-------PQGLAEKSPLQTI-GEEQ WD 2 33-70 -YTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIV-VVWN WD 3 74-119 -GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTV-IVWD WD 4 123-159 -TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGND--L-CVWN WD 5 163-202 -DLLCKTSHLSDTGISALVEIPK-------NCVVAAVGKELIIFRLVA WD 6 212-249 -ILEVKRLLDHQDNILSLINVND-------LS-FVTGSHVGEL-IIWD WD 7 271-308 -TQQEIKLCQKSNDISIHHFTCD-------EENVFAAV-GRGL-YVYS WD 8 313-350 -RVIACQKTAHDSNVLHVARLPN-------RQ-LISCSEDGSV-RIWE WD 9 354-391 -KQQLAAEPVPTGFFNMWGFGRV-------SK-QASQPVKKQQ-ENAT WD10 395-432 -LELIGDLIGHSSSVEMFLYFED-------HG-LVTCSADHLI-ILWK WD40 Template TGECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTI-KVWD |
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