Input parameters:

  Query = sp_Q69ZJ7_RIC1_MOUSE (Len=1422)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q69ZJ7_RIC1_MOUSE, Len=1422):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYSRPSVLIVTYKEPAKSSTQFGSYKQAEWRPDSTM 80  
WD40-rpts                                                               (________________WD 1__

Query       81 IAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLEDLLVATS 160 
WD40-rpts      _____________)                                                                  

Query      161 DGLLHLIHWEGMTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAE 240 
WD40-rpts                                                                              (_______

Query      241 QLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSA 320 
WD40-rpts      _____________WD 2____________________)                (_________________WD 3____

Query      321 VIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGLGSQHTQIETDLRSTVKEPSI 400 
WD40-rpts      _____________)                                                                  

Query      401 LLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHW 480 
WD40-rpts                                                                                      

Query      481 HVVQISSTYLESNWPIRFSAIDKLGQNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSD 560 
WD40-rpts                                                                                      

Query      561 CQEELRIYLRTSNLDNAFAHVTKAPMETLLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQEVSMSRYIPHP 640 
WD40-rpts                                                                                      

Query      641 FLVVSVTLTSVSTENGISLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVW 720 
WD40-rpts                                                                                      

Query      721 TTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSL 800 
WD40-rpts                                                                                      

Query      801 YTRSSAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPD 880 
WD40-rpts                                                                                      

Query      881 PLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATL 960 
WD40-rpts                                                                                      

Query      961 LFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTG 1040
WD40-rpts                                                                                      

Query     1041 PSGKRWSKDSECAENMYIDMMLWRHARRLLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWP 1120
WD40-rpts                                                                                      

Query     1121 LPIIPASSISSPFKNGKCRAVGEQMLKSQSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPGPQMQDAFLSP 1200
WD40-rpts                                                                                      

Query     1201 LSNKGDECSIGSATDLTESSSVVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCV 1280
WD40-rpts                                                                                      

Query     1281 VIGLILRESSVVSQLLGIAQSSEMDGEMLQNIKSGLQAVDRWASTDCPGYKPFLNIIKPQLQKLSEITEELVQPDTFQPV 1360
WD40-rpts                                                                                      

Query     1361 TVGKTPEQTSPRAEENRGSCSHGSISQSEPGSNNVVSRKEEDTTQADEEEPLQDGAYDCSVS 1422
WD40-rpts                                                                    

3 WD40-repeats found in QUERY=sp_Q69ZJ7_RIC1_MOUSE (Len=1422):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    58-94       3.24  248.60  0.02745       15.0%     38.77
  WD 2:  Seg 15   233-278      3.33  252.19  0.02459       15.0%     42.12
  WD 3:  Seg 19   295-334      6.59  387.07  0.00038       22.5%     35.74

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-94     EPAKSSTQFG---------SYKQAEWRPDSTMIAVSTANGYILFFH
   WD 2  233-278    VSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYT
   WD 3  295-334    TAKQYPDIWNK------TGAVKLIRWSPDNSAVIVTWEYGGLSLWS

   WD40 Template    TGECLRTLSGH------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD