Input parameters:

  Query = prl1 (Len=486)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (prl1, Len=486):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGGVEPVVSQPPRQPDRINEQPG 80  
WD40-rpts                                                                                      

Query       81 PSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPILPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRP 160 
WD40-rpts                                            (_________________WD 1_________________)  

Query      161 EWHAPWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDK 240 
WD40-rpts           (_________________WD 2________________)   (_________________WD 3___________

Query      241 QVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTG 320 
WD40-rpts      _____)   (_________________WD 4________________)   (_________________WD 5_______

Query      321 SHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVM 400 
WD40-rpts      _________)   (_________________WD 6________________)   (________________WD 7____

Query      401 VTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPINFKPP 480 
WD40-rpts      ____________)           (_________________WD 8________________)                 

Query      481 KEIRRF 486 
WD40-rpts            

8 WD40-repeats found in QUERY=prl1 (Len=486):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   119-158      5.07  324.00  0.00268       17.5%     39.53
  WD 2:  Seg  6   166-204      9.56  509.62  8.4e-06       40.0%     55.74
  WD 3:  Seg 10   208-246      9.56  509.65  8.4e-06       30.0%     57.29
  WD 4:  Seg 14   250-288      9.87  522.33  5.7e-06       32.5%     57.38
  WD 5:  Seg 18   292-330      9.98  527.01  4.9e-06       42.5%     56.94
  WD 6:  Seg 22   334-372      9.13  491.85  1.5e-05       27.5%     54.35
  WD 7:  Seg 26   376-413      7.93  442.23  6.8e-05       27.5%     56.01
  WD 8:  Seg 31   425-463      8.23  454.59  4.6e-05       25.0%     41.72

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  119-158    GLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWP
   WD 2  166-204    WKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTI-KIWD
   WD 3  208-246    GVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQV-KCWD
   WD 4  250-288    NKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVC-RVWD
   WD 5  292-330    KMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTI-KFWD
   WD 6  334-372    GKTMSTLTHHKKSVRAMTLHPKENAFASASADNTK-KFSL
   WD 7  376-413    EFCHNMLSQQKTIINAMAVNEDG-VMVTGGDNGSI-WFWD
   WD 8  425-463    TIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTI-KMWK

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-KVWD