Input parameters:

  Query = CmaCh18G007320 (Len=421)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G007320, Len=421):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVRSWLIPCATATATAADSNTPPQSSSFSISDTSVNSSSSSTPTSDTSCSTLQSNLSLQSQPSIPSLQTLPTVTDTGNV 80  
WD40-rpts        (_________________WD 1_________________)                                      

Query       81 AVSQLHLASFKLPISHLAVHGPHLYVAIAHEINVYDRSTYTHVASINARDSSSGAVKGIAFLNAQILTSHQDGKIRVWNL 160 
WD40-rpts              (___________WD 2___________)(___________________WD 3__________________) 

Query      161 TNNQFKKVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNRNSFYSVSWDRSLKFWQGSDHRCVESVKA 240 
WD40-rpts                                        (______________WD 4______________)   (________

Query      241 AHEDAINAVVVSAAGIVYTGSADRRIRVWSKPAAEKRHILVTTLEKHKSAVNALALNDDGSLLFSGACDRSVLVWERVDG 320 
WD40-rpts      _________WD 5________________)       (_________________WD 6________________)    

Query      321 ANHMAVIGALRGHKNAILCLIYVSDLLLSGSADWTVRVWRRVGDGSFNCLSVLEGHRKPVKSLVVVSDGLSNGVVSVCSG 400 
WD40-rpts         (________________WD 7_______________)      (___________________WD 8__________

Query      401 SLDGELKAWKLSFSNLNGILN 421 
WD40-rpts      _________)           

8 WD40-repeats found in QUERY=CmaCh18G007320 (Len=421):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       5.86  356.71  0.00097        7.5%     -4.31
  WD 2:  Seg  3    89-116      3.10  242.73  0.03285        7.5%     38.69
  WD 3:  Seg  6   117-159      6.32  375.85  0.00054       17.5%     56.05
  WD 4:  Seg 13   195-228      6.42  379.67  0.00048       20.0%     48.98
  WD 5:  Seg 17   232-270      6.97  402.62  0.00023       27.5%     51.07
  WD 6:  Seg 21   278-316      9.38  502.13  1.1e-05       32.5%     52.17
  WD 7:  Seg 25   324-360      7.39  419.80  0.00014       30.0%     50.31
  WD 8:  Seg 29   367-410      8.40  461.65  3.7e-05       40.0%     52.72

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     VR-----SWLIPC-ATATATAADSNTPPQS-----SSFSISDTSVNSSSSS
   WD 2   89-116    ---------------SFKLPISHLAVHGPH-----LYVAI---AHEINVYD
   WD 3  117-159    RSTYTHVASINAR-DSSSGAVKGIAFL--N-----AQILTSHQDGKIRVWN
   WD 4  195-228    ---------KVLW-IQHADAVTGLAVNRNS-------FYSVSWDRSLKFWQ
   WD 5  232-270    -H-----RCVESVKAAHEDAINAVVVSAAG------IVYTGSADRRIRVWS
   WD 6  278-316    -H-----ILVTTL-EKHKSAVNALALNDDG-----SLLFSGACDRSVLVWE
   WD 7  324-360    -M-----AVIGAL-RGHKNAILCLIYVSD-------LLLSGSADWTVRVWR
   WD 8  367-410    -F-----NCLSVL-EGHRKPVKSLVVVSDGLSNGVVSVCSGSLDGELKAWK

   WD40 Template    TG-----ECLRTL-SGHTSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD