Input parameters:

  Query = CmaCh10G003230 (Len=949)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh10G003230, Len=949):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLPRIFLLFSLCFSLFPSSFSLSHPDPLTIRPFQVNHSPPATIPAFPEQSEVQGCRLDLPDDLFHGIKTACGPSKGGV 80  
WD40-rpts                                                                                      

Query       81 SGNLHRSRCCPVLAAWLYAAYSATALRRPVRASAGPGHTAPSYDLPLLPDDSETCVSNLDQALNQKGIELMKPNETCDVV 160 
WD40-rpts                                                                                      

Query      161 YCYCGIRLHPLSCPEAFSLTHDGILEGDRNVKRLERNCLSSSNSNGFPGLGGCSKCLSTLYQLNNKEALNSSKPENRTIK 240 
WD40-rpts                                                                                      

Query      241 MHHTECQLMGLTWLLAKNRTAYIRTVTSVLRAKMMSKDGSDPRSCTLNSDGMPLAVDSAEISGSSVSVSIQAPFSQIDSP 320 
WD40-rpts                     (_______________________WD 1_______________________)(____________

Query      321 FRHFQHLLFFFFFFIALIMATAELCETYACVPSTERGRGILISGHPKTNSVLYTNGRSVIILNLDNPLEVSVYAEHAYPA 400 
WD40-rpts      ________WD 2___________________)(_____________WD 3____________)   (_____________

Query      401 TVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLTGRIDDLQWSPDGMRIVVCGEGKGKSLVRAFMWDSGTNVGE 480 
WD40-rpts      ____WD 4________________)(____________________WD 5____________________)   (_____

Query      481 FDGHSRRVLSCGFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRNHSNFVNCARFSPDGSKFISVSSDKKGIIYDAKTG 560 
WD40-rpts      ____________WD 6_________________)   (_________________WD 7________________)   (

Query      561 DKMGELSPDDGHKGSIYAVSWSSDGKQVLTVSADKTAKVWVISDDGNGKLVKTLTSPGTGGIDDMLVGCLWQNQHLVTVS 640 
WD40-rpts      __________________WD 8__________________)      (__________________WD 9__________

Query      641 LGGTISLFSANDLEKTPVILSGHMKNVTSLVVLKSDPKVILSTSYDGLIIKWIQGIGFSGKLQRRENSQIKCFAALEDEL 720 
WD40-rpts      ________)    (_________________WD10_________________)(_________________WD11_____

Query      721 VTSGFDNKVWRVSIKNGECGEAEAIDVGSQPKDLTLAALSPELALVSIDSGVVLLRGSKVVSTVNLGFTVTASVLAPDGS 800 
WD40-rpts      ____________)       (_______________WD12_______________)(_________________WD13__

Query      801 EAIIGGEDGKLHIYSVVGDSLAEEATLERHRGAVSVIRYSPDLSMFASGDLNREAIVWDRASREVKLKNMLYHTARINCL 880 
WD40-rpts      ______________)     (_________________WD14________________)(___________________W

Query      881 AWSPDNTKVATGSLDTCIIIYEIDKPASNRLTIKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKMVPQ 949 
WD40-rpts      D15__________________)     (________________WD16________________)    

16 WD40-repeats found in QUERY=CmaCh10G003230 (Len=949):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   256-307      6.21  371.38  0.00062       22.5%     32.71
  WD 2:  Seg  5   308-352      5.13  326.49  0.00248        7.5%     21.90
  WD 3:  Seg  8   353-383      2.78  229.46  0.04918        7.5%     44.49
  WD 4:  Seg 11   387-425      8.94  483.93  1.9e-05       22.5%     56.19
  WD 5:  Seg 15   426-471      6.40  378.95  0.00049       22.5%     56.26
  WD 6:  Seg 19   475-514      7.59  428.36  0.00010       25.0%     57.43
  WD 7:  Seg 23   518-556      9.04  488.04  1.6e-05       30.0%     59.62
  WD 8:  Seg 27   560-601      8.61  470.36  2.8e-05       42.5%     56.79
  WD 9:  Seg 31   608-649      6.70  391.51  0.00033       27.5%     54.35
  WD10:  Seg 35   654-693      7.40  420.33  0.00013       40.0%     54.74
  WD11:  Seg 39   694-733      5.33  334.71  0.00192       12.5%     49.34
  WD12:  Seg 43   741-776      4.45  298.56  0.00588       15.0%     49.55
  WD13:  Seg 47   777-815      8.52  466.52  3.2e-05       25.0%     58.30
  WD14:  Seg 51   821-859      8.29  457.07  4.3e-05       30.0%     52.96
  WD15:  Seg 55   860-902      8.58  469.28  2.9e-05       25.0%     58.87
  WD16:  Seg 59   908-945      6.98  403.02  0.00023       30.0%     51.92

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  256-307    AK-----NRTAYIRTVTSVLRAKMMS---KDGSDPRS---CTLNSDGM-PLAVDSAE---ISGSSVS
   WD 2  308-352    VSIQAPFS---QIDSP---------F---RHFQHLLF---FFFFFIAL-IMATAELC---ETYACVP
   WD 3  353-383    -------------------------S---TERGRGIL---ISGHPKTN-SVLY-TNG---RSVIILN
   WD 4  387-425    -P-----L---EVSVY---------A---EHAYPATV---ARYSPNGE-WIASADVS---GTVRIWG
   WD 5  426-471    TH-----SGFVLKKEF---------K---VLTGRIDD---LQWSPDGM-RIVVCGEGKGKSLVRAFM
   WD 6  475-514    -G-----T---NVGEF---------D---GHSRRVLS---CGFKPTRPFRIATCGED---FLVNFYE
   WD 7  518-556    -F-----R---FKLSL---------R---NHSNFVNC---ARFSPDGS-KFISVSSD---KKGIIYD
   WD 8  560-601    -G-----D---KMGEL---------SPDDGHKGSIYA---VSWSSDGK-QVLTVSAD---KTAKVWV
   WD 9  608-649    -G-----K---LVKTL---------T---SPGTGGIDDMLVGCLWQNQ-HLVTVSLG---GTISLFS
   WD10  654-693    -E-----K---TPVIL---------S---GHMKNVTS--LVVLKSDPK-VILSTSYD---GLIIKWI
   WD11  694-733    QG-----I---GFSGK---------L---QRRENSQI---KCFAALED-ELVTSGFD---NKVWRVS
   WD12  741-776    -E-----A---EAIDV---------G---SQPKDLTL---AALSPE----LALVSID---SGVVLLR
   WD13  777-815    -G-----S---KVVST---------V---NLGFTVTA---SVLAPDGS-EAIIGGED---GKLHIYS
   WD14  821-859    -L-----A---EEATL---------E---RHRGAVSV---IRYSPDLS-MFASGDLN---REAIVWD
   WD15  860-902    RA-----SREVKLKNM---------L---YHTARINC---LAWSPDNT-KVATGSLD---TCIIIYE
   WD16  908-945    -S-----N---RLTIK---------G---AHLGGVYG---LAFTDDYS--VVSSGED---ACVRVWK

   WD40 Template    TG-----E---CLRTL---------S---GHTSGVTS---VSFSPDGK-RLVSGSED---GTIKVWD