Input parameters:

  Query = CsaV3_1G022930 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G022930, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHFQNDDLEYIVDDYYEVDDFDDGSVLSDDEFHTNKNTEHVDSDFEDDIDTTTPRTDTSALDFRNGKDIQGIPWERFTF 80  
WD40-rpts                                                                                      

Query       81 TRDNYRENRLSQYRNYESLSSSRAELEKECLQVEKGNSFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMH 160 
WD40-rpts                                                                                      

Query      161 WSSLLRRGKEVLNVAKPIVPTLKRPGLSSQSLSRVQISTMTVKENLIVAGGFQGELICKYLDHPGVAFCTKMTTEENAIT 240 
WD40-rpts                   (_____________________WD 1____________________)(___________________

Query      241 NAVDIFHNQDGALRVVAANNDAKVRIFDAKTFTCLNGFTFGWSVNNTAVSPDGKMLAVLGDSTDCLLADANSGKVIESLK 320 
WD40-rpts      __WD 2_____________________)   (________________WD 3________________)   (_______

Query      321 GHLDYSFASAWHPDGRILATGNQDRTCRLWDIRNTSKSLAVLKGRMGAIRCVKFSSDGKFLSTAEPADFVHIYESHTGYK 400 
WD40-rpts      __________WD 4________________)    (_________________WD 5________________)   (__

Query      401 QAQEIDLFGEIAGISFSPDTEALFIGVADRTYGSVLEFNKRHHNKYIDSIF 451 
WD40-rpts      _______________WD 6________________)               

6 WD40-repeats found in QUERY=CsaV3_1G022930 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   174-220      5.99  362.25  0.00082       15.0%     46.85
  WD 2:  Seg  9   221-268      5.96  360.90  0.00085       17.5%     44.62
  WD 3:  Seg 13   272-309      7.05  405.96  0.00021       25.0%     56.66
  WD 4:  Seg 17   313-351     10.35  542.08  3.1e-06       32.5%     52.77
  WD 5:  Seg 21   356-394      8.98  485.72  1.8e-05       25.0%     57.37
  WD 6:  Seg 25   398-436      6.96  402.36  0.00024       25.0%     53.46

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  174-220    VAK-------PIVPTLKRPGLSSQSLSRVQISTMTVKEN-LIVAGGFQGELICKY
   WD 2  221-268    LDHPGVAFCTKM-------TTEENAITNAVDIFHNQDGALRVVAANNDAKVRIFD
   WD 3  272-309    -FT-------CL-------NGFT-FGWSVNNTAVSPDGK-MLAVLGDSTDCLLAD
   WD 4  313-351    -GK-------VI-------ESLKGHLDYSFASAWHPDGR-ILATGNQDRTCRLWD
   WD 5  356-394    -SK-------SL-------AVLKGRMGAIRCVKFSSDGK-FLSTAEPADFVHIYE
   WD 6  398-436    -GY-------KQ-------AQEIDLFGEIAGISFSPDTE-ALFIGVADRTYGSVL

   WD40 Template    TGE-------CL-------RTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD