WDRR: WD40 Repeat Recognition
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| JobID: O4QT31659500602 Submitted: 2022-08-03 12:23:22 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750771 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh12G011950 (Len=1138) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh12G011950, Len=1138): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKPDRAKAVDILVKDLKVFAAFNEDLFKEITQLLTLDNFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGSVPKAAAFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTPAALPTSLAGWMGNPSSVPHPSASAGPIGLNAANNAAAILKRPRTPPTNNPTMDCQTADSEHVLKRARPFGLSEEVNN 320
WD40-rpts
Query 321 LSVNILPVGYANQGHGQSSYSSDDLPKNVVTNLSQGSVVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVW 400
WD40-rpts (_________________WD 1_________________)
Query 401 DLSACSVPLQASLAGDYTASINRVMWSPDGTVFGVAYSKSIVHIYSYQAGDDLRNHLEIEAHVGSVNDLAFSYPNKQLSL 480
WD40-rpts (____________________WD 2____________________) (__________________WD 3_____
Query 481 VTCGEDRVIKVWDTVTGVKQFTFEGHDAPVYSICPHHKESIQFIFSTATDGKIKAWLYDNVGSRVDYDAPGHSSTTMSYS 560
WD40-rpts ____________) (__________________WD 4_________________) (___________________
Query 561 ADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDDFSVKFWDMDSVNLLTSIDADG 640
WD40-rpts WD 5__________________) (_________________WD 6_________________) (__________
Query 641 GLPASPCIRFNKDGNLLAVSTNDNGIKILANAEGIRMLRTVENRTFDAAASRVASAPVVKAPTIGSMIPTSVTVGMSMGD 720
WD40-rpts ________WD 7_________________)(____________________WD 8___________________) (_
Query 721 RTAPVAAMVGINNDNRSLADIKPRIADESADKSRIWKLTEVNEPTQCRSLRLHDNLTAAKLFQISRLIYTNSGLAILALA 800
WD40-rpts _________________WD 9__________________) (____________________WD10____________
Query 801 SNAVHKLWRWQRNDRNATGKATASIAPQLWQPTSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 880
WD40-rpts ________) (___________________WD11___________________) (_
Query 881 TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHHKRITGLAFSNHLNVLVSSGADSQLCVWS 960
WD40-rpts ________________WD12_________________) (_________________WD13________________)
Query 961 TDGWEKQVSKFLQIPSSRTAAPLADTRVQFHGDQTHLLAIHETQIAIYEAPKLECLKQWFPREASGPITHATYSCDSQSI 1040
WD40-rpts (________________WD14_______________) (__________________WD15_____
Query 1041 YVSFEDGSVGVLTASTLRLRCRINPNAYLTSSPSLRVHPLVIAAHPSEPNQFALGLSDGGVHVLEPSESEGKWGTSPPVE 1120
WD40-rpts ____________) (______________________WD16_____________________)
Query 1121 NGAGSSTASAAGPDQPHR 1138
WD40-rpts
 16 WD40-repeats found in QUERY=CmaCh12G011950 (Len=1138): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 8 346-385 6.45 380.93 0.00046 25.0% 57.52 WD 2: Seg 13 401-446 6.74 392.98 0.00031 15.0% 48.71 WD 3: Seg 16 453-493 7.11 408.55 0.00019 35.0% 50.70 WD 4: Seg 20 497-537 7.23 413.51 0.00017 30.0% 57.69 WD 5: Seg 24 541-583 6.21 371.22 0.00062 22.5% 57.01 WD 6: Seg 28 587-626 7.45 422.27 0.00013 30.0% 58.30 WD 7: Seg 32 630-670 6.69 391.09 0.00033 20.0% 57.55 WD 8: Seg 36 671-715 6.17 369.45 0.00065 27.5% 50.36 WD 9: Seg 40 719-760 3.07 241.45 0.03416 15.0% 21.78 WD10: Seg 44 764-809 6.27 373.71 0.00057 15.0% 55.10 WD11: Seg 50 832-875 4.76 311.19 0.00398 15.0% 44.40 WD12: Seg 54 879-918 7.12 408.93 0.00019 22.5% 58.43 WD13: Seg 58 922-960 8.96 484.68 1.8e-05 32.5% 59.10 WD14: Seg 63 973-1009 3.92 276.50 0.01164 20.0% 39.09 WD15: Seg 66 1013-1053 6.74 393.03 0.00031 25.0% 55.64 WD16: Seg 70 1057-1105 4.58 303.77 0.00501 15.0% 42.18Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 346-385 -PK---N------V-----VT--NLS-QG--S-------VVKSM--DFHP-QQ----------QT-ILLVGTNVGD----VMIWE WD 2 401-446 DLS---ACSVPLQA-----SL--AGD-YT--A-------SINRV--MWSP-DG----------TV--FGVAYSKSI----VHIYS WD 3 453-493 -LR---N------H-----LE--IEA-HV--G-------SVNDL--AFSY-PN----------KQLSLVTCGEDRV----IKVWD WD 4 497-537 -GV---K------Q-----FT--FEG-HD--A-------PVYSICPHHKE-SI----------QF--IFSTATDGK----IKAWL WD 5 541-583 -VG---S------R-----VD--YDA-PG--H-------SSTTM--SYSA-DG----------TR--LFSCGTNKEGESHLVEWN WD 6 587-626 -GA---V------K-----RT--YHGLGK--R-------SVGVV--QFDT-TK----------NR--FLAAGDDFS----VKFWD WD 7 630-670 -VN---L------L-----TS--IDA-DG--G-----LPASPCI--RFNK-DG----------NL--LAVSTNDNG----IKILA WD 8 671-715 NAEGIRM------L-----RT--VEN-RTFDA-------AASRV--ASAP-VV----------KA--PTIGSMIPT----SVTVG WD 9 719-760 -GD---R------T-----AP--VAA-MV--G-------INNDN-RSLAD-IK----------PR--IADESADKS--RIWKLTE WD10 764-809 -PT---Q------C-----RS--LRL-HD--NLTAAKLFQISRL--IYTN-SG----------LA--ILALASNAV----HKLWR WD11 832-875 PTS---G------ILMTNDIS--DTN-PE--D-------AVPCF--ALSK-ND----------SY--VMSAS-GGK----ISLFN WD12 879-918 -FK---T------M-----TT--FMP-PP--P-------AATFL--AFHPQDN----------NI--IAIGMEDSS----IQIYN WD13 922-960 -DE---V------K-----TK--LKG-HH--K-------RITGL--AFSN-HL----------NV--LVSSGADSQ----LCVWS WD14 973-1009 QIP---S------S-----RT----A-AP--L-------ADTRV--QFHG-DQ----------TH--LLAIH-ETQ----IAIYE WD15 1013-1053 -LE---C------L-----KQWFPRE-AS--G-------PITHA--TYSC-DS----------QS--IYVSFEDGS----VGVLT WD16 1057-1105 -LR---L------R-----CR--INP-NA--Y-------LTSSP--SLRV-HPLVIAAHPSEPNQ--FALGLSDGG----VHVLE WD40 Template TGE---C------L-----RT--LSG-HT--S-------GVTSV--SFSP-DG----------KR--LVSGSEDGT----IKVWD |
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