Input parameters:

  Query = PF3D7_0517700 (Len=716)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (PF3D7_0517700, Len=716):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRVSDNELSDKELVDFLSEDSDNGDENLLNKKYSDKEALITLEVDFPKIVTILGIPKVESEKHGRLAEVLKKLFIRHLS 80  
WD40-rpts                                                                                      

Query       81 AKISDSSLLNMKIHMPTDEENKTKGICFVTFNDSFQANEAVKILNKLKLDAKHILTTSKMDDIENIINRDEKAMPINVVG 160 
WD40-rpts                                                                                      

Query      161 FTREKIRWWLYDEKCREQFIVRYDSHFEVHWFDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDSF 240 
WD40-rpts                                            (________________WD 1________________)(___

Query      241 EKLIRLQHKSVKEIMFSPNENYVLTWDGTPYSLRNEKSICIWRVITGKLLRSFITPEYSPKEKMFPHFLWSPDDKYIACI 320 
WD40-rpts      __________________WD 2____________________)   (___________________WD 3__________

Query      321 GKQKEVYVYELPSMLLIEDQEKKRTPLKYSGVKEFDWSPVDNILAIWIPQTNDTPGTLILVDVPSRKELVSRKIYDVSVA 400 
WD40-rpts      _________)                                                       (______________

Query      401 SIHWHNKGDYLCLKTTIQKKSGKKIKKEYTQLEIFRMREKNIPVDNVQIEAVKTKQFHWEESNSNRFALILREETTNKQQ 480 
WD40-rpts      ___WD 4________________)                                                        

Query      481 IRFYKISNKGTARDAKWSSTFDINNQMNFMKWSPQGTYFILASLASEGTLYFCCLNNNDEVDVIHKDEHLLVNSISWSRC 560 
WD40-rpts            (_____________________WD 5_____________________)    (_________________WD 6

Query      561 GRFLVSAVSNNPNAFNTGYREENSEAGFHIWTFQGKCLMRIKKPSFIQFLFRPHPKSLFNDKLKLDIKNNLNNYSKKFDN 640 
WD40-rpts      ________________)                                                               

Query      641 IDEKMKTAKKNALLTERKNVENSFNQKFQEITALFQSYQEYEQLKKNWETFENQFEWEEKTIVIEHVLSVKEEIFA 716 
WD40-rpts                                                                                  

6 WD40-repeats found in QUERY=PF3D7_0517700 (Len=716):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   199-236      4.81  313.42  0.00371       27.5%     53.01
  WD 2:  Seg 12   237-283      5.31  333.97  0.00196       15.0%     51.99
  WD 3:  Seg 16   287-330      5.01  321.77  0.00287       20.0%     44.38
  WD 4:  Seg 25   386-424      4.35  294.33  0.00671       12.5%     35.98
  WD 5:  Seg 32   487-534      4.15  286.25  0.00861       17.5%     47.15
  WD 6:  Seg 36   539-577      5.49  341.60  0.00155       22.5%     40.81

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-236    -PQ------LIYTTFKKNAPFSS-----VQWSNQGSY--LVSFH-------NPG-IALWG
   WD 2  237-283    GDS------FEKLIRLQHKSVKE-----IMFSPNENY--VLTWDGTPYSLRNEKSICIWR
   WD 3  287-330    -GK------LLRSFITPEYSPKEKMFPHFLWSPDDKY--IACIG-------KQKEVYVYE
   WD 4  386-424    -RK------ELVSRKIYDVSVAS-----IHWHNKGDY--LCLKT-------TIQKKSGKK
   WD 5  487-534    SNKGTARDAKWSSTFDINNQMNF-----MKWSPQGTYFILASLA-------SEGTLYFCC
   WD 6  539-577    -DE------VDVIHKDEHLLVNS-----ISWSRCGRF--LVSAV-------SNNPNAFNT

   WD40 Template    TGE------CLRTLSGHTSGVTS-----VSFSPDGKR--LVSGS-------EDGTIKVWD