Input parameters:

  Query = AT2G34260.1 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G34260.1, Len=353):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIDLGANAFGIDFHPSTNLVAAGLIDGHLHLYRYDSDSSLVRERKVRAHKESCRAVRFIDDGQRIVTASADCSILATDV 80  
WD40-rpts      (______________WD 1______________)         (_______________WD 2_______________) 

Query       81 ETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSGDGTLS 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCD 240 
WD40-rpts      __)   (_________________WD 5________________)(___________________WD 6___________

Query      241 NGIISLVGILPNRIIQPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNASGAAEDSDSDNDGMD 320 
WD40-rpts      _______)   (_________________WD 7________________)(___________________WD 8______

Query      321 LDNDPSKSSKGSKRKTKSKANTLNATNNFFADL 353 
WD40-rpts      ____________)                    

8 WD40-repeats found in QUERY=AT2G34260.1 (Len=353):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       6.74  393.00  0.00031       12.5%     43.78
  WD 2:  Seg  5    44-79       8.71  474.60  2.5e-05       30.0%     49.29
  WD 3:  Seg  9    83-121      9.15  492.78  1.4e-05       20.0%     56.57
  WD 4:  Seg 13   125-163      9.71  515.71  7.0e-06       27.5%     58.65
  WD 5:  Seg 17   167-205      8.92  483.33  1.9e-05       15.0%     54.90
  WD 6:  Seg 21   206-248      8.37  460.51  3.9e-05       20.0%     56.90
  WD 7:  Seg 25   252-290      9.33  499.92  1.1e-05       22.5%     59.30
  WD 8:  Seg 29   291-333      7.22  413.04  0.00017       22.5%     29.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ------------MEIDLGANAFGIDFHPSTNLVAAGLIDGHLHLYR
   WD 2   44-79     -------E---RKVRAHKESCRAVRFIDDGQRIVTASADCSILATD
   WD 3   83-121    -G---AQV---AHLENAHEDAVNTLINVTETTIASGDDKGCVKIWD
   WD 4  125-163    -R---SCS---HEFNAHEDYISGMTFASDSMKLVVTSGDGTLSVCN
   WD 5  167-205    -S---KVQ---SQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYS
   WD 6  206-248    WGFFKDCS---DRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVG
   WD 7  252-290    -N---RII---QPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWN
   WD 8  291-333    LE---EILEGSNVNSGNASGAAEDSDSDNDGMDLDNDPSKSSKGSK

   WD40 Template    TG---ECL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD