Input parameters:

  Query = CsaV3_5G031590 (Len=581)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G031590, Len=581):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAP 80  
WD40-rpts                                                                                      

Query       81 IYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEKNDAISVYNIPQH 160 
WD40-rpts                                                                                      

Query      161 EQKKRKIEKKKEMSENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKG 240 
WD40-rpts                                                                            (_________

Query      241 EVTSDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDV 320 
WD40-rpts      ___________WD 1____________________)   (_________________WD 2_________________) 

Query      321 FNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 400 
WD40-rpts         (_________________WD 3________________)   (__________________WD 4____________

Query      401 KIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAA 480 
WD40-rpts      _____)   (_________________WD 5________________)(___________________WD 6________

Query      481 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEW 560 
WD40-rpts      __________)       (_________________WD 7_________________)   (_________________W

Query      561 HPLEQSKVATCGWDGLIKYWD 581 
WD40-rpts      D 8_________________)

8 WD40-repeats found in QUERY=CsaV3_5G031590 (Len=581):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   231-276      3.78  270.61  0.01396       20.0%      6.70
  WD 2:  Seg  5   280-319      8.01  445.35  6.2e-05       37.5%     55.34
  WD 3:  Seg  9   324-362     10.28  539.43  3.3e-06       40.0%     57.72
  WD 4:  Seg 13   366-406      6.01  363.02  0.00080       30.0%     52.42
  WD 5:  Seg 17   410-448      9.34  500.49  1.1e-05       25.0%     57.21
  WD 6:  Seg 21   449-491      7.06  406.32  0.00021       22.5%     50.00
  WD 7:  Seg 26   499-538      7.95  443.14  6.6e-05       27.5%     46.47
  WD 8:  Seg 29   542-581      7.42  421.37  0.00013       27.5%     53.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  231-276    KG---E---EKG-GEKGEVTSDKSTF-H-GKEERDYQGRSWIAPPKDAKATNDHC
   WD 2  280-319    -K---RLVHTWS-GHTKGVSAIRFFP-KHGHL---------ILSAGMDTKVKIWD
   WD 3  324-362    -G---KCMRTYM-GHSQAVRDISFCN-D-GSK---------FLTAGYDKKIKYWD
   WD 4  366-406    -G---QVISTFSTGKIPYVVKLNPDD-D-KQN--------ILLAGMSDKKIVQWD
   WD 5  410-448    -G---QITQEYD-QHLGAVNTITFVD-N-NRR---------FVTSSDDKSLRVWE
   WD 6  449-491    FGIPVVIKYISE-PHMHSMPSISVHP-N-TNW---------LAAQSLDNQILIYS
   WD 7  499-538    NK---KKRFAGH-IVAGYACQVNFSP-D-GRF---------VMSGDGEGKCWFWD
   WD 8  542-581    -C---KVFRTLK-CHEGVCIGCEWHPLE-QSK---------VATCGWDGLIKYWD

   WD40 Template    TG---ECLRTLS-GHTSGVTSVSFSP-D-GKR---------LVSGSEDGTIKVWD