Input parameters:

  Query = CsaV3_5G034620 (Len=840)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G034620, Len=840):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSSGGEVDVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKQ 80  
WD40-rpts              (________________WD 1________________)   (______________________WD 2____

Query       81 FKSHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHNKGITCIAAHVISETVVIFASASSDGSVCVWEVAFPSTNEGDC 160 
WD40-rpts      __________________)        (__________________WD 3__________________)           

Query      161 TLLLLDTLVVGSKSMVALSLAELPGNVGHMVLAMGGLDNKIHLYCAKRAGECMQFVKACELKGHTDWIRSLDFSLPMGKN 240 
WD40-rpts       (___________________WD 4___________________)         (_____________________WD 5

Query      241 GEANNVMLVSSSQDRGIRIWKMALHGSSADINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQP 320 
WD40-rpts      ____________________)                                     (_____________________

Query      321 PSASETEGIPYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNV 400 
WD40-rpts      __WD 6______________________)(______________________WD 7_____________________)  

Query      401 GTSSDNWKPHKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFSPWKSVNSLEGGSWHEIARPQVHGHDINCVTIIQGK 480 
WD40-rpts            (_________________WD 8________________)                 (_______________WD

Query      481 GNHRFVSGAEEKVARVFEAPLSFLKTLSHATLTNVVANEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGID 560 
WD40-rpts       9_______________)                                        (____________________W

Query      561 TLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDNKGKLVASSCKAQTASVAEIWLWEVGSWKAVGR 640 
WD40-rpts      D10____________________)   (___________________WD11___________________)   (_____

Query      641 LQSHSLTITQMEFSNDDSMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKI 720 
WD40-rpts      ____________WD12________________)          (_________________WD13_______________

Query      721 WAVTPESSVKQLTTLSQFKSSVTALSWVGLDSKSNGFLAIGMENGLLELWNLSIKRTDNIYSNVVASVAIRLDPFVCHVS 800 
WD40-rpts      _)      (___________________WD14__________________)     (______________WD15_____

Query      801 SVNRLAWKKPEKSGEECRKLQFASCGTDHCVRVFEVNVFV 840 
WD40-rpts      _________)                              

15 WD40-repeats found in QUERY=CsaV3_5G034620 (Len=840):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-46       4.68  308.12  0.00438       15.0%     53.05
  WD 2:  Seg  5    50-99       7.56  426.81  0.00011       37.5%     56.26
  WD 3:  Seg  9   108-149      6.75  393.61  0.00031       27.5%     52.87
  WD 4:  Seg 13   162-205      4.95  318.98  0.00313       20.0%     53.41
  WD 5:  Seg 17   215-261      6.67  390.38  0.00034       35.0%     54.06
  WD 6:  Seg 24   299-349      7.40  420.21  0.00014       30.0%     51.08
  WD 7:  Seg 28   350-398      6.94  401.19  0.00024       20.0%     56.54
  WD 8:  Seg 32   407-445      8.18  452.40  5.0e-05       25.0%     53.27
  WD 9:  Seg 37   463-498      7.30  416.16  0.00015       20.0%     48.54
  WD10:  Seg 45   539-584      5.10  325.33  0.00257        7.5%     48.74
  WD11:  Seg 49   588-631      6.63  388.74  0.00036       25.0%     55.90
  WD12:  Seg 53   635-673      8.50  465.83  3.3e-05       25.0%     58.65
  WD13:  Seg 57   684-722      8.44  463.30  3.5e-05       30.0%     53.73
  WD14:  Seg 61   729-771      6.56  385.65  0.00039       35.0%     55.62
  WD15:  Seg 65   777-810      4.64  306.27  0.00463       15.0%     32.93

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-46     DVK---------GV------FIGAGCNRIVNNVS---W----G--------A-----------CD-------------LVAFGAQNA-----VAIFS
   WD 2   50-99     -AQ---------IL------TTLPGHNASVNCTH---W----L--------P-----------SNKFSFRAKQFKSHYLLSGDSDGA-----IHLWE
   WD 3  108-149    -RN---------VL------QLPKSHNKGITCIAAHVI----S--------E-----------TVV-----------IFASASSDGS-----VCVWE
   WD 4  162-205    -LL---------LL------DTLVVGSKSMVALS---L----A--------E------LPGNVGHM-----------VLAMGGLDNK-----IHLYC
   WD 5  215-261    -FV---------KA------CELKGHTDWIRSLD---F----SLPMGKNGEA-----------NNV-----------MLVSSSQDRG-----IRIWK
   WD 6  299-349    QVS---------LE------SLLIGHEDWVYSVQ---W----Q--------PPSASETEGIPYQSE-----------SILSASMDKT-----MMIWK
   WD 7  350-398    PEKTSGIWMNVVTV------GELSHCALGFYGGH---W----S--------P-----------NGD-----------SILAHGYGGS-----FHLWR
   WD 8  407-445    -WK---------PH------KVPSGHFAAVMDIS---W----A--------R-----------SGD-----------YIISVSHDQT-----TRIFS
   WD 9  463-498    -------------R------PQVHGHDINCVTII---Q----G--------K-----------GNH-----------RFVSGAEEKV-----ARVFE
   WD10  539-584    QKP---------IYVHSADKTPDRSGNEGIDTLE---T----I--------P-----------DAV-----------PVILTEPPIE-----DQLAW
   WD11  588-631    -WP---------ES------HKLYGHGNELFSLC---C----D--------N-----------KGK-----------LVASSCKAQTASVAEIWLWE
   WD12  635-673    -WK---------AV------GRLQSHSLTITQME---F----S--------N-----------DDS-----------MLLAVSRDRQ-----FSVFK
   WD13  684-722    -HE---------LI------SRQEAHRRIIWSCS---W----N--------P-----------HGH-----------EFATGSRDKT-----VKIWA
   WD14  729-771    -VK---------QL------TTLSQFKSSVTALS---WVGLDS--------K-----------SNG-----------FLAIGMENGL-----LELWN
   WD15  777-810    ---------------------TDNIYSNVVASVA---I----R--------L-----------DPF-----------VCHVSSVNRL-----AWKKP

   WD40 Template    TGE---------CL------RTLSGHTSGVTSVS---F----S--------P-----------DGK-----------RLVSGSEDGT-----IKVWD