Input parameters:

  Query = CmaCh05G002140 (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G002140, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKTQRMFIDTTNFTNMKFGNFLTQNSDLKISMVIDDDGDFPTPASSDSANSRPSSDGSPPVFSPWNQTYPRTKSPCFTEF 80  
WD40-rpts                     (_________________WD 1________________)                          

Query       81 KNGDVYRSNSNYKNSSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGH 160 
WD40-rpts                    (________________WD 2_______________)(________________WD 3________

Query      161 QDGKIRVWKETPKNPSGGYRRDGTLPALRDVLRSSINPQNYVVVGRNRSRLWFKHADAVSCLCLSDDKTILYSSSWDKTM 240 
WD40-rpts      ________)                                   (_________________WD 4______________

Query      241 KVWRISDSKCLESLTVHDDAVNVIVAASDGLVITGSADGTAKVWRRQHEEENDATKHTLEQTLVKQNSAVTAVAVNAAGT 320 
WD40-rpts      ___)   (________________WD 5________________)           (_________________WD 6__

Query      321 VVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLATAGNCMVLSGAADNTICVWRRDGLFHTCVSVLTGHTGPVKCLA 400 
WD40-rpts      ______________)(__________________WD 7__________________)     (_________________

Query      401 VKGDPCRRSKDGGRRWIVYSGSLDRSVKVWGVSDSLGG 438 
WD40-rpts      _____WD 8_____________________)       

8 WD40-repeats found in QUERY=CmaCh05G002140 (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-54       7.73  433.98  8.8e-05       15.0%     37.85
  WD 2:  Seg  7    95-131      6.77  394.40  0.00030       25.0%     50.36
  WD 3:  Seg 11   132-169      8.57  468.64  3.0e-05       22.5%     51.76
  WD 4:  Seg 17   205-244     10.20  535.81  3.7e-06       32.5%     53.48
  WD 5:  Seg 21   248-285      8.67  472.63  2.7e-05       37.5%     49.73
  WD 6:  Seg 25   297-335      8.75  476.22  2.4e-05       30.0%     55.19
  WD 7:  Seg 29   336-377      7.01  404.14  0.00022       27.5%     53.88
  WD 8:  Seg 33   383-431      7.86  439.14  7.5e-05       37.5%     51.67

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-54     -MK---FGNFLTQNSDLKISMVIDDDGDF----------PTPASSDSANSRPS
   WD 2   95-131    -SS---LIGSLVREEGHVYS--LATAGEL----------LYTGSDSKNIRVWK
   WD 3  132-169    NLK---EFTGFKSSSGLVKAIIIS--GEK----------IFTGHQDGKIRVWK
   WD 4  205-244    GRN---RSRLWFKHADAVSCLCLSDDKTI----------LYSSSWDKTMKVWR
   WD 5  248-285    -SK---CLESLTVHDDAVNVIVAASDG-L----------VITGSADGTAKVWR
   WD 6  297-335    -HT---LEQTLVKQNSAVTAVAVNAAGTV----------VYCGSSDGLVNFWE
   WD 7  336-377    REKRLTYGGALKGHNLAVLCLATAGNC-M----------VLSGAADNTICVWR
   WD 8  383-431    -HT---CVSVLTGHTGPVKCLAVKGDPCRRSKDGGRRWIVYSGSLDRSVKVWG

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKR----------LVSGSEDGTIKVWD