Input parameters:

  Query = PF3D7_1224400 (Len=595)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (PF3D7_1224400, Len=595):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHNNHIFEDDDIILTDRFLSDESSENDKREKKKYIKENKKNIENVSNVLLNNNFNKNVGMKRNNSIFNNEENKDKNYFTN 80  
WD40-rpts                                                                                      

Query       81 NDLIEHKNKSLLKDKSNEFSFNKHNYSNTRYDNNVTGNYFDFDNYYVSNMDNTNNPEKEIYKYDENIEIDGKNKKNNKRL 160 
WD40-rpts                                                                                      

Query      161 KRSTRVWHDSDDDIDVKNEHLDTYGNYLNEEKFHSDDSNEFNYVDEKEDENLIRNIEAHDNVFEEYIDEHVHMENISSNT 240 
WD40-rpts                                                                                      

Query      241 NKDAISHIQADDIYIFDDEKIDMHIQKKKKWNKKNDNNIFLKYFLQKFTIHQIEEKKVKQLVCLPKSNLIFPVYNLNLYM 320 
WD40-rpts                                                                                      

Query      321 LKYEDNSLNISKKISFKRKIKYVQEYKDNLYILSYDNFLRNYNLEKGLVYKNRIHYDKLDISLPREIKFVDKNTEDENNT 400 
WD40-rpts                                                             (____________________WD 1

Query      401 SSSYLFSLSFQNSGKINVYDSRSYDIIKTFEMSNKYVGMNFHKKSNSLFALDEKGYLYNWCLNTNKLIDKLVDNYSIFPS 480 
WD40-rpts      ___________________)(__________________WD 2_________________)   (_______________

Query      481 CLNIYNDYLITGSCNGFLNLFDINNLNTPIKSFKNLTLRVHDIVYNPSHNMLLYYTDIMKNGIKLIDLKTKYVYCNVPWF 560 
WD40-rpts      _WD 3________________)    (__________________WD 4_________________)   (_________

Query      561 NINVKYNIYAANFFNNGNNLCFAVSSNSFYVYNIY 595 
WD40-rpts      __________WD 5__________________)  

5 WD40-repeats found in QUERY=PF3D7_1224400 (Len=595):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   376-420      5.63  347.38  0.00130       17.5%     40.08
  WD 2:  Seg 14   421-461      6.15  368.66  0.00067       12.5%     55.52
  WD 3:  Seg 18   465-502      6.08  365.99  0.00073       17.5%     55.34
  WD 4:  Seg 22   507-547      6.36  377.25  0.00051       17.5%     51.58
  WD 5:  Seg 26   551-593      5.94  360.19  0.00087       10.0%     53.88

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  376-420    YDK-LDISLPREIKFVDKNT----EDENNTSSSYLFSLSFQN--SGKINVYD
   WD 2  421-461    SRSYDIIKTF-----EMSNK----YVGMNFHKKSNSLFALDE--KGYLYNWC
   WD 3  465-502    -NK-LIDKLV-----DNYS-----IFPSCLNIYNDYLITGSC--NGFLNLFD
   WD 4  507-547    -NT-PIKSFK-----NLTLR----VHDIVYNPSHNMLLYYTDIMKNGIKLID
   WD 5  551-593    -KY-VYCNVP-----WFNINVKYNIYAANFFNNGNNLCFAVS--SNSFYVYN

   WD40 Template    TGE-CLRTLS-----GHTSG----VTSVSFSPDGKRLVSGSE--DGTIKVWD