Input parameters:

  Query = CsaV3_3G047860 (Len=726)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G047860, Len=726):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDFAFHDGNVCALLESRHINFRQDPAYGLQMHSSFIQRLSQEKELEGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYS 80  
WD40-rpts      (_______________WD 1_______________)  (_________________WD 2_________________)(_

Query       81 GRKLLHSVDTGHSANIFCTKFVPEMSDDLVLSGAGDAEVRLFNLSRLRGRGQDDNPIAPSALYRCHARRVKKLAVEIGNP 160 
WD40-rpts      ___________________WD 3___________________)             (_________________WD 4__

Query      161 NVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFA 240 
WD40-rpts      _______________)                         (___________________WD 5_______________

Query      241 RLYDRRMLPPLSSSQKRMSPPPCVSYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHGGLGTMQYTS 320 
WD40-rpts      ___)                       (_________________WD 6_________________)   (_________

Query      321 GDVSKLMSFTPVLNGFELQHHVSNLSNSFPLNCGGNAKLDRSRKLLQIAEKCLEGGNYFGGIEACNEILDGNGRNIGVIL 400 
WD40-rpts      _________WD 7_________________)   (_________________WD 8________________)   (___

Query      401 KHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNSEVAEKVE 480 
WD40-rpts      ______________WD 9________________)                                        (____

Query      481 SIKRDLAADANSDVSQDGLRSEREDSDYDEEVELDFETLSGDESHDVDSNVLHGSLNLRIHRRIDPSRERVGPNGSCGSP 560 
WD40-rpts      ____________________WD10________________________)   (_________________WD11______

Query      561 SSSQNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQKGEYVASGSDDGRWFIWEKETGRLIKILVGDGAVVNCVQS 640 
WD40-rpts      __________)(_____________________WD12____________________)   (_________________W

Query      641 HPFDCAIATSGIDNTIKLWTPTAPVPSVVAGGAVGPQEADVLAVIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHP 720 
WD40-rpts      D13________________)                                                            

Query      721 FECAQS 726 
WD40-rpts            

13 WD40-repeats found in QUERY=CsaV3_3G047860 (Len=726):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       5.99  361.98  0.00082        7.5%     15.04
  WD 2:  Seg  4    39-78      10.65  554.78  2.1e-06       32.5%     52.56
  WD 3:  Seg  8    79-123      6.34  376.75  0.00052       17.5%     54.00
  WD 4:  Seg 12   137-176      5.75  352.36  0.00111       22.5%     50.09
  WD 5:  Seg 17   202-244      6.74  393.17  0.00031       15.0%     41.85
  WD 6:  Seg 22   268-307      7.71  432.99  9.1e-05       17.5%     44.34
  WD 7:  Seg 25   311-351      4.53  301.61  0.00535       15.0%     31.98
  WD 8:  Seg 28   355-393      4.67  307.58  0.00445        5.0%     16.40
  WD 9:  Seg 30   397-435      3.67  266.39  0.01589       12.5%     33.83
  WD10:  Seg 37   476-529      6.13  367.90  0.00069       10.0%     15.62
  WD11:  Seg 39   533-571      6.87  398.57  0.00026       10.0%     43.39
  WD12:  Seg 43   572-618      6.54  384.83  0.00041       25.0%     50.36
  WD13:  Seg 47   622-660      8.76  476.39  2.4e-05       27.5%     55.14

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ------------------------MEDFAFH----DGNVCALLESR--H--INFR-QDPAYGLQMHSSF
   WD 2   39-78     RL---S---Q--------------EKELEGH----QGCVNAVAWNS--R--GSLL-ISGSDDTRINIWS
   WD 3   79-123    YS---GRKLL--------------HSVDTGH----SANIFCTKFVP--EMSDDLV-LSGAGDAEVRLFN
   WD 4  137-176    -I---A---P--------------SALYRCH----ARRVKKLAVEI--G--NPNVVWSASEDGTLRQHD
   WD 5  202-244    CGAKRS---L--------------ADPPRQT----LALKSCDISST--R--PHLL-LVGGSDAFARLYD
   WD 6  268-307    CP---M---H--------------LSDRVRS----GLHLTHVTFSP--N--GEEI-LLSYSGEHVYLMN
   WD 7  311-351    -G---G---L--------------GTMQYTS----GDVSKLMSFTPVLN--GFEL-QHHVSNLSNSFPL
   WD 8  355-393    -G---N---A--------------KLDRSRK----LLQIAEKCLEG--G--NYFG-GIEACNEILDGNG
   WD 9  397-435    -G---V---I--------------LKHDSLC----TRAALLLKRKW--K--NDVH-MAIRDCYSARKID
   WD10  476-529    AE---K---VESIKRDLAADANSDVSQDGLR----SEREDSDYDEE--V--ELDF-ETLSGDESHDVDS
   WD11  533-571    -H---G---S--------------LNLRIHR----RIDPSRERVGP--N--GSCG-SPSSSQNDATLYQ
   WD12  572-618    PEPVID---M--------------KQRYVGHCNIGTDIKQASFLGQ--K--GEYV-ASGSDDGRWFIWE
   WD13  622-660    -G---R---L--------------IKILVGD----GAVVNCVQSHP--F--DCAI-ATSGIDNTIKLWT

   WD40 Template    TG---E---C--------------LRTLSGH----TSGVTSVSFSP--D--GKRL-VSGSEDGTIKVWD