Input parameters:

  Query = CsaV3_1G000870 (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G000870, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIMSPNEIANEAIKHALRALRQRHLLEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAE 80  
WD40-rpts                                                                                      

Query       81 VRTSKSLIGEKEAVIDNLEQELSRARDECSQLKADLEIKLKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWML 160 
WD40-rpts                                                                                      

Query      161 QKMQDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFENNSG 240 
WD40-rpts                                                              (_________________WD 1__

Query      241 KLISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGRVRHTLTGHSDKVCAVDVS 320 
WD40-rpts      ______________)   (_________________WD 2________________)   (_________________WD

Query      321 KVSSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVRFSMDGQTICSGHVDGNLRLWDIQTGKLISEVAGHSLAVTS 400 
WD40-rpts       3_________________)   (________________WD 4________________)   (_______________

Query      401 LSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDIVSTLK 480 
WD40-rpts      __WD 5________________)           (_______________WD 6______________)   (_______

Query      481 ESTASVLCCSWSGLGKPLASADRNGIIFTWN 511 
WD40-rpts      __________WD 7________________)

7 WD40-repeats found in QUERY=CsaV3_1G000870 (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   217-255     10.26  538.66  3.4e-06       32.5%     55.10
  WD 2:  Seg  9   259-297      9.71  515.81  6.9e-06       22.5%     56.86
  WD 3:  Seg 13   301-340      9.14  492.28  1.4e-05       40.0%     55.69
  WD 4:  Seg 17   344-381      8.50  465.92  3.3e-05       37.5%     55.54
  WD 5:  Seg 21   385-423      9.76  517.92  6.5e-06       27.5%     56.01
  WD 6:  Seg 26   435-469      6.25  372.90  0.00059       25.0%     36.56
  WD 7:  Seg 30   473-511      9.48  506.06  9.4e-06       32.5%     52.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  217-255    SVCKHRIRGHEGGCGTILFEN-NSGKLISGGQDRTVKLWD
   WD 2  259-297    GSLSSTLHGCLGSVLDLAITH-DNRSVIAASSSNNLYAWD
   WD 3  301-340    GRVRHTLTGHSDKVCAVDVSKVSSRYVVSAAYDRTIKIWD
   WD 4  344-381    GYCTKTFIFA-SNCNAVRFSM-DGQTICSGHVDGNLRLWD
   WD 5  385-423    GKLISEVAGHSLAVTSLSLSR-NGNTILTSGRDNLHNLFD
   WD 6  435-469    ----ASGNRVASNWSRSCISP-DDNYVAAGSADGSVHVWS
   WD 7  473-511    HDIVSTLKESTASVLCCSWSG-LGKPLASADRNGIIFTWN

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD