Input parameters:

  Query = CsaV3_6G042010 (Len=299)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G042010, Len=299):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGG 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEII 160 
WD40-rpts      _______)   (_________________WD 3________________)     (________________WD 4____

Query      161 GGSVDGTVRTFDMRIGREISDNLGQTVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240 
WD40-rpts      ___________)(_________________WD 5_________________)   (__________________WD 6__

Query      241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVVTSVSYHPKDKCMITASVDGTIRVWKT 299 
WD40-rpts      _______________)   (_________________WD 7________________) 

7 WD40-repeats found in QUERY=CsaV3_6G042010 (Len=299):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       9.42  503.59  1.0e-05       32.5%     53.16
  WD 2:  Seg  5    50-88       9.67  514.31  7.3e-06       30.0%     58.71
  WD 3:  Seg  9    92-130      9.91  523.98  5.4e-06       30.0%     57.43
  WD 4:  Seg 13   136-172      7.44  421.90  0.00013       25.0%     50.72
  WD 5:  Seg 17   173-212      7.76  435.38  8.4e-05       17.5%     53.76
  WD 6:  Seg 21   216-256      8.42  462.49  3.6e-05       32.5%     54.17
  WD 7:  Seg 25   260-298     10.22  536.70  3.6e-06       40.0%     55.80

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     PTKESNVLKGHEGGV--LAARFNSDGNYCLSCGKDRTIRLWN
   WD 2   50-88     -GIHIKTYKSHGREV--RDVHVTPDNSKLCSCGGDRQVFYWD
   WD 3   92-130    -GRVIRKFRGHDGEV--NAVKFNEYASVVVSAGYDQSLRAWD
   WD 4  136-172    -TEPIQIIDTFSDSV--MSVCLTKSE--IIGGSVDGTVRTFD
   WD 5  173-212    MRIGREISDNLGQTV--NCISMSNDANCILASCLDSTLRLLD
   WD 6  216-256    -GELLQEYKGHTCKSYKLDCCLTNTDAHVTGGSEDGFVYFWD
   WD 7  260-298    -ASVVSKFRAHSSVV--TSVSYHPKDKCMITASVDGTIRVWK

   WD40 Template    TGECLRTLSGHTSGV--TSVSFSPDGKRLVSGSEDGTIKVWD