Input parameters:

  Query = Yeast (Len=834)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Yeast, Len=834):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNMAEDKTSISKVHSEFSNSSNTTGSEEESRSHQESFDGESSSGESKSKSKLNLEYSADIEPLKFRMTKTNNTNDKLKY 80  
WD40-rpts                              (_________________WD 1________________)                 

Query       81 SNNGNATDSFMRLKEHLQRGNTLNSNLRVNEFYPFNSIDTEQFENYLREPKYIKMLKRRKNLKQFRRLFLAQELMAYEGE 160 
WD40-rpts                                               (________________WD 2_______________)  

Query      161 TVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIRIWKVIGSPVERAELDSSAESNKEARAKSMRIKQQVSSLNNPK 240 
WD40-rpts        (_________________WD 3________________)                  (__________________WD

Query      241 EKQFLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRKNSLKTFIHPDF 320 
WD40-rpts       4_________________)           (______________WD 5______________)(______________

Query      321 VTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFH 400 
WD40-rpts      ____WD 6__________________)  (_________________WD 7_________________)           

Query      401 VADRQTQEQNAHVMVTETDSKIRHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQ 480 
WD40-rpts                          (________________WD 8_______________)   (___________________

Query      481 LSIWHGQPIVVNSSDDHWVYGWRLKSSDRENDQDEPKRKPKGLARSGSLRSIFSKSMSRSSSQNNEEKPHHHLKLTNLLP 560 
WD40-rpts      WD 9__________________)   (_________________WD10________________)               

Query      561 LPHHSNDHYIKNTDYISFHAHNAPVTCVSIAPPETSKTLSLSNDVICELSLEFFQTSDSFDVLSRSNDDGIMSDVESSLG 640 
WD40-rpts                 (_________________WD11________________)                           (__

Query      641 YNSKPGSISNASATSAIPDVVDAIGTILISTDNVGTIRVFRADMPSVIRKRVLLKLEEYNREVRRRFNSSDSLHSLSRSF 720 
WD40-rpts      _________________WD12___________________)    (___________________WD13___________

Query      721 NSRAKSNLAGQPAAAYTNTGKGYATGRGYSNICPKSSTSLKTLGSNAQPRTPRESMSSIFSNAHGPTTPTSAMNLPIRCN 800 
WD40-rpts      _______)             (_________________WD14________________)                    

Query      801 VCNGSRFEAFSGANDQQDRNYYCVDCGTVVNNFR 834 
WD40-rpts                                        

14 WD40-repeats found in QUERY=Yeast (Len=834):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-63       4.84  314.41  0.00360       10.0%      0.08
  WD 2:  Seg  3   122-158      5.86  356.67  0.00097        2.5%     34.89
  WD 3:  Seg  6   163-201      9.09  490.20  1.5e-05       30.0%     53.15
  WD 4:  Seg 10   220-260      5.58  345.33  0.00138       17.5%     44.75
  WD 5:  Seg 13   272-305      6.89  399.12  0.00026       25.0%     47.86
  WD 6:  Seg 16   306-347      6.77  394.37  0.00030       27.5%     55.89
  WD 7:  Seg 20   350-389      6.12  367.46  0.00069       22.5%     55.21
  WD 8:  Seg 26   421-457      6.07  365.40  0.00074       22.5%     36.08
  WD 9:  Seg 29   461-503      7.26  414.75  0.00016       25.0%     53.92
  WD10:  Seg 33   507-545      7.13  409.19  0.00019        7.5%     29.14
  WD11:  Seg 36   572-610      5.62  346.85  0.00132       17.5%     48.39
  WD12:  Seg 41   638-681      4.39  296.17  0.00633       30.0%     16.72
  WD13:  Seg 43   686-728      3.16  244.99  0.03066       17.5%     35.21
  WD14:  Seg 47   742-780      3.43  256.53  0.02153       10.0%      9.22

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-63     -TG-SE------EESRS--HQESFD----GESSSG-E-----SKSKSKLNL--EYSADIEP
   WD 2  122-158    ----QF------ENYLR--EPKYIK----MLKRRK-N-----LKQFRRLFL--AQELMAYE
   WD 3  163-201    -TS-TS------KSSEP--TSKAIW----STKFSR-D-----GKFMATGSK--DGKIRIWK
   WD 4  220-260    -KE-AR------AKSMR--IKQQVS----SLNNPK-E-----KQFLDSATEKYEEKEKLLN
   WD 5  272-305    ------------RLYKE--HVQDVL----DINWSK-N-----N-FILSASM--DKTVKLWH
   WD 6  306-347    PDRKNS------LKTFI--HPDFVT----CVEFHPTD-----DRFFISGCL--DHKCRLWS
   WD 7  350-389    -DD-EV------SFEYD--CQDLIT----SVTLSPEE-----GKYTIIGTF--NGYVHILM
   WD 8  421-457    KIR-HG------PRVTG--L---QA----FRSQLD-N-----SFRLVVTSN--DSRIRIFD
   WD 9  461-503    -RK-LL------EVLKG--FHSGSSQHKAQLSIWH-G-----QPIVVNSSD--DHWVYGWR
   WD10  507-545    -SD-RE------NDQDE--PKRKPK----GLARSG-S-----LRSIFSKSM--SRSSSQNN
   WD11  572-610    -NT-DY------ISFHA--HNAPVT----CVSIAP-P-----ETSKTLSLS--NDVICELS
   WD12  638-681    -SL-GY------NSKPG--SISNAS----ATSAIP-DVVDAIGTILISTDN--VGTIRVFR
   WD13  686-728    ------SVIRKRVLLKLEEYNREVR----RRFNSS-D-----SLHSLSRSF--NSRAKSNL
   WD14  742-780    -GY-AT------GRGYS--NICPKS----STSLKT-L-----GSNAQPRTP--RESMSSIF

   WD40 Template    TGE-CL------RTLSG--HTSGVT----SVSFSP-D-----GKRLVSGSE--DGTIKVWD