WDRR: WD40 Repeat Recognition
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| JobID: MZGNM1659505793 Submitted: 2022-08-03 13:49:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79744575 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G002360 (Len=675) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G002360, Len=675): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDEGSTGALVPAVKTEPLSSTISAPSIPDCSLAELDTVGEASAQLDKDFLCPICMQIIRDAFLTACGHSFCYMCIITHLR 80
WD40-rpts
Query 81 NKSDCPCCAQHLTSVQLFPNFLLDKLLKKTSAHQIAKTATPIELFRRALQEGCDVSIKELDSLLSMLSEKKRKMEQEESD 160
WD40-rpts
Query 161 RNMNILTDFLHILRKQKVSELNEVQTDLQFIKADISAVERHRMELYCARDRYSMKLHMAGDDMKAREPWSSLTDKRNDGP 240
WD40-rpts
Query 241 TSTSLNTWGVVSAGNFQNKKADSRSQVSTYGLYRKDALNRPEPQANHTGLSVARKKRVHAQFNDLQECYLQKRRQLPNQL 320
WD40-rpts
Query 321 LDQQEKDKNVIHREGYTAGLSDFQSVLTTFTRYSRLRVIAELRHGDIFHSTNIVSSIEFDRDDELFATAGVSRCIKVFDF 400
WD40-rpts (_______________WD 1_______________) (________________WD 2_______________)
Query 401 SSVVNESTDVHCPIVEMSTRAKLSCLSWNKLSKNIIASSDYEGVVTVWDVNRGQSVLEYEEHEKRAWSVDFSCTEPSRLV 480
WD40-rpts (_________________WD 3_________________) (_________________WD 4______
Query 481 SGSDDCKVKVWCMKQENSVLDIDMKANICCVKFNPGSSNHIAVGSADHNIHYYDLRKISHPLHVFTGHKKAVSYVKFLSN 560
WD40-rpts ___________) (_________________WD 5________________) (________________WD 6_
Query 561 SELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNREYIACGSETNEIFVYHKEISRPLTWHRFGSPDAADVED 640
WD40-rpts _______________) (_________________WD 7________________) (______
Query 641 DVGSYFISAVCWKSNSPTILTANSQGTIKVLVLAV 675
WD40-rpts ___________WD 8________________)
 8 WD40-repeats found in QUERY=CmaCh20G002360 (Len=675): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 325-360 4.09 283.73 0.00931 7.5% 39.87 WD 2: Seg 4 363-399 7.43 421.59 0.00013 22.5% 52.34 WD 3: Seg 8 410-449 6.44 380.51 0.00046 20.0% 47.55 WD 4: Seg 12 453-492 8.48 464.95 3.4e-05 40.0% 55.26 WD 5: Seg 16 496-534 5.68 349.40 0.00122 20.0% 55.56 WD 6: Seg 20 539-576 8.18 452.63 4.9e-05 32.5% 49.05 WD 7: Seg 24 580-618 8.51 466.14 3.2e-05 27.5% 56.12 WD 8: Seg 28 634-672 5.94 360.08 0.00087 15.0% 48.55Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 325-360 ----EKDKNVIHREGYTAGLSD-FQSV-LTTFTRYSRLRVIA WD 2 363-399 RH---GDIFHSTNIVSSIEFDR-DDEL-FATAGVSRCIKVFD WD 3 410-449 -VHCPIVEMSTRAKLSCLSWNK-LSKNIIASSDYEGVVTVWD WD 4 453-492 -GQSVLEYEEHEKRAWSVDFSCTEPSR-LVSGSDDCKVKVWC WD 5 496-534 -ENSVLDIDMKAN-ICCVKFNPGSSNH-IAVGSADHNIHYYD WD 6 539-576 -SHPLHVFTGHKKAVSYVKFLS-NSE--LASASTDSTLRLWD WD 7 580-618 -NLPVRTFRGHTNEKNFVGLTV-NREY-IACGSETNEIFVYH WD 8 634-672 -DAADVEDDVGSYFISAVCWKS-NSPT-ILTANSQGTIKVLV WD40 Template TGECLRTLSGHTSGVTSVSFSP-DGKR-LVSGSEDGTIKVWD |
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