Input parameters:

  Query = CsaV3_7G026710 (Len=1343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G026710, Len=1343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRLRAFRPSSEKIVKIQMHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGIDQRRLVGAKLEKLAEGDLDSKGKPAE 80  
WD40-rpts        (________________WD 1_______________)                                         

Query       81 AIRGGSVKQVNFYDDDVRFWQLWRNRSAAAEAPSAVNQVTSALSTPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQ 160 
WD40-rpts                  (_________________________WD 2_________________________)      (_____

Query      161 DLDNKSLLCMEFLSRSSGGDGPLVAFGGSDGVIRVLSMLTWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGASDGLLV 240 
WD40-rpts      ______________WD 3__________________)(____________________WD 4__________________

Query      241 LWSADNSQDSRELVPKLSLKAHDGGVVAVELSRVIGGAPQLITIGADKTLAIWDTISFKELRRIKPVPKLACHSVASWCH 320 
WD40-rpts      __)(_______________________WD 5______________________)                          

Query      321 PRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAPNKKVRVYCMIAHPLQPHLVATGTNIGVIISELDA 400 
WD40-rpts                                                                                      

Query      401 RSLPAVAPLPTPSGGREHSAVYIVERELKLLNFQLSHTTNPSLGNNGSLSEGGRLKGDELLQVKQVKKHISTPVPHDAYS 480 
WD40-rpts                               (________________WD 6________________)  (______________

Query      481 VLSISSSGKYLAIIWPDIPYFSIYKVSDWSIVDSGSARLLAWDTCRDRFALLESAIPPRFPTIPKGGSSRRAKEAAAAAA 560 
WD40-rpts      ___WD 7_________________)                                                       

Query      561 QAAAAAASAASSASVQVRILLDDGTSNILMRSIGSRSEPVVGLHGGALLGVAYRTSRRISPVAATAISTMPLSGFGNSGV 640 
WD40-rpts                                                            (_________________WD 8____

Query      641 SSFTSFDDGFSSLKSSAETTPPNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLRPQYRYLGDVAIP 720 
WD40-rpts      _____________)                                                                  

Query      721 HATGAVWHRRQLFVATPTTIECVFVDCGVAPIDIETRRMKEEMKLKDAQAKAIAEHGELALITVDGPQTATQERITLRPP 800 
WD40-rpts                                                                                      

Query      801 MLQVVRLASYQQAPSVPPFLSLPKQSKADADDSMMQKDFEERKANEIAVGGGGVSVAVTRFPAEQKRPVGPLVVVGVRDG 880 
WD40-rpts                                                  (______________________WD 9_________

Query      881 VLWLIDRYMSAHALSLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYAAEALHLPGISKRLEFDLAMQ 960 
WD40-rpts      ____________)                                                                   

Query      961 GNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILSLTTKKEDMVETFQGIVKFAKEFLDLIDAADATGQADIAREALKRLA 1040
WD40-rpts                                                                                      

Query     1041 AAGSLKGALQGHEIRGLALRLANHGELTRLSGLVNNLISVGSGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHG 1120
WD40-rpts                                                                                      

Query     1121 RPTLKSLVESWNKMLQKEMEHTSSEKTDATAAFFASLEEPKLTSLADAGKKPPIEILPPGMPTLSSSILGPKKPTPGAQG 1200
WD40-rpts                                                                                      

Query     1201 ALQQPAKQLMLEAPPANPQPPPDGTSTQSEPNEQTAGGNALTSTTATDTSPTTPAENGPTTSNGSEPSDIQLASSNTTPP 1280
WD40-rpts                                                                                      

Query     1281 VETQIPTPSVNDTIHPEAILESPEVQNSSVPISSFTNDAPPPSEAPSEVPELQNTPLPNVSQI 1343
WD40-rpts                                                                     

9 WD40-repeats found in QUERY=CsaV3_7G026710 (Len=1343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-39       5.63  347.10  0.00131       17.5%     50.24
  WD 2:  Seg  9    93-148      3.32  251.65  0.02501       15.0%     43.99
  WD 3:  Seg 12   155-197      4.55  302.58  0.00519       25.0%     29.18
  WD 4:  Seg 15   198-243      5.83  355.67  0.00100       27.5%     52.49
  WD 5:  Seg 19   244-294      6.04  364.30  0.00077       27.5%     48.72
  WD 6:  Seg 29   426-463      3.75  269.39  0.01449       20.0%     28.68
  WD 7:  Seg 32   466-505      4.06  282.36  0.00971       20.0%     55.09
  WD 8:  Seg 43   615-654      4.14  285.53  0.00880       10.0%      8.17
  WD 9:  Seg 51   845-893      3.00  238.55  0.03731       27.5%     28.53

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-39     -----------RLR----------------AFRPSS---EKIVKI---QM---HP---THPWLVTADAS-DHVSVWN-------
   WD 2   93-148    YDD--------DVRFWQLWRNRSAAAEAPSAVNQVT---SALSTP---AP---ST---KGRHFLVICCE-NKAIFLD-------
   WD 3  155-197    RDV--------PKQ----------------DLDNKSLLCMEFLSR---SS---GG---DGPLVAFGGSD-GVIRVLS-------
   WD 4  198-243    MLT-----WKLVRR----------------YTGGHK---GSISCL---MTFMASS---GEALLVSGASD-GLLVLWS-------
   WD 5  244-294    ADNSQDSRELVPKL----------------SLKAHD---GGVVAV---EL---SRVIGGAPQLITIGAD-KTLAIWD-------
   WD 6  426-463    --R--------ELK----------------LLNFQL---SHTTNP---SL---GN---NGSLSEGGRLK-GDELLQV-------
   WD 7  466-505    VKK--------HIS----------------TPVPHD---A-YSVL---SI---SS---SGKYLAIIWPDIPYFSIYK-------
   WD 8  615-654    TSR--------RIS----------------PVAATA---ISTMPL---SG---FG---NSGVSSFTSFD-DGFSSLK-------
   WD 9  845-893    N-E--------IAV----------------GGGGVS---VAVTRFPAEQK---RP---VGPLVVVGVRD-GVLWLIDRYMSAHA

   WD40 Template    TGE--------CLR----------------TLSGHT---SGVTSV---SF---SP---DGKRLVSGSED-GTIKVWD-------