WDRR: WD40 Repeat Recognition
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| JobID: MWYTB1659514158 Submitted: 2022-08-03 16:09:18 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79735449 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G015150 (Len=1219) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G015150, Len=1219): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAAFHPKEDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDIGALRKKTVSPADDVLRLSQMNADLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_________________WD 5________________)(_______
Query 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFAISGDSLFYVKDRFLRYYEFSTQKDSQVIPIRRPGSTSLNQSPRTLSFSPTENTILICSDLDGGCYEFYTIPKDS 400
WD40-rpts
Query 401 FGRSDSLQDAKRGLGGSAVFVARNRFAVLDKSHNQVLLKSLKNEVVKKVPIPITADAIFYAGTGNLLCRAEDRVVIYDLQ 480
WD40-rpts (_
Query 481 QRIILGDLQTPFVRYVCWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDG 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIRTLDVPIYITKVSGNTLFCLDRDGTVRSFIIDATEYIFKLSLLKKRFDHVMSMIRNSQLCGQAMIAYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNTAKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYVTASTHGLHDVAERLAAELGDDIPSLPEGKTASLLLPPT 800
WD40-rpts
Query 801 PVMCGGDWPLLRVMKGIFEGGLDNVGPGRADDDDDEVADGDWGEELDVVDVDGLQNGDVTAILEDEEGAEENEEEGGWDL 880
WD40-rpts
Query 881 EDLELPPEADTPKVSVSSRNSVFVAPTPGIPANQVWTQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLRPIFLDLHA 960
WD40-rpts
Query 961 GSQTYLRAFSSAPIISLAVERGFSESSNANAKGSPALIYSFSQLEEKLKAGYKATTTGKFSDALRLFLSILHTIPLIVVE 1040
WD40-rpts
Query 1041 SRREVDEVKELIIIVKEYVLGLQMELKRRELKDNPVRQMELAAYFTHCNLQLPHLRLALLNAMTVCYKAKNLASAANFAR 1120
WD40-rpts
Query 1121 RLLETNPSIENQAKTARQVLQAAERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVLSQEGQLCSVCD 1200
WD40-rpts
Query 1201 LAVIGADASGLLCSPTQNR 1219
WD40-rpts
 8 WD40-repeats found in QUERY=CsaV3_2G015150 (Len=1219): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.54 302.29 0.00524 20.0% 49.55 WD 2: Seg 4 41-79 7.43 421.41 0.00013 32.5% 56.55 WD 3: Seg 8 83-121 8.48 465.12 3.4e-05 37.5% 56.99 WD 4: Seg 12 125-163 8.90 482.25 2.0e-05 37.5% 55.30 WD 5: Seg 18 194-232 7.68 431.83 9.4e-05 32.5% 56.87 WD 6: Seg 22 233-276 8.39 461.25 3.8e-05 37.5% 55.29 WD 7: Seg 26 280-317 3.28 250.11 0.02621 17.5% 55.16 WD 8: Seg 44 479-518 3.30 250.81 0.02566 17.5% 46.45Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------KFETKSNRVKGLSFHTKRPWILASLHSGVIQLWD WD 2 41-79 -GTL----IDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HRC----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN WD 4 125-163 -RTC----ISVLTGHNHYVMCAAFHPKEDLVVSASLDQTVRVWD WD 5 194-232 -AVV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWD WD 7 280-317 -RTG----LQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQR----IILGDLQTPFVRYVCWSNDMESVALLSKHAIIIANK WD40 Template TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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