WDRR: WD40 Repeat Recognition
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| JobID: MTNZZ1450988722 Submitted: 2015-12-25 04:25:22 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288263502 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_A2AH22_AMRA1_MOUSE (Len=1300) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_A2AH22_AMRA1_MOUSE, Len=1300): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKVVPEKNAVRILWGRERGTRAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80
WD40-rpts (___________________WD 1__________________
Query 81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160
WD40-rpts ) (_________________WD 2_________________) (________________WD 3_____________
Query 161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240
WD40-rpts ___)(___________________WD 4___________________)
Query 241 HNFLHMLSSRSSGIQVGEQSTVQDSATPSPPPPPPQPSTERPRTSAYIRLRQRVSYPTTVECCQHPGILCLCSRCAGTRV 320
WD40-rpts (_________________
Query 321 PSLLPHQDSVPPASARATTPSFSFVQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPL 400
WD40-rpts _WD 5_________________) (__________
Query 401 SSHPSRYHRELAPGLTGSEWTRTVLTLNSRSEVESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPSSGLAT 480
WD40-rpts _______WD 6________________)
Query 481 ESDGGNGSSQNNSGSIRHELQCDLRRFFLEYDRLQELDQSLSGETPQTQQAQEMLNNNIESERPGPSHLPTPHSSENNSN 560
WD40-rpts
Query 561 LSRGHLNRCRACHNLLTFNNDTLRWERTTPNYSSGEASSSWHVSTTFEGMPPSGNQLPPLERTEGQMPSSSRLELSSSAS 640
WD40-rpts
Query 641 SQEERTVGVAFNQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRRLLESSLISLSRYDGAGSREHPIYPDPA 720
WD40-rpts
Query 721 RLSPAAYYAQRMIQYLSRRDSIRQRSMRYQQNRLRSSTSSSSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAP 800
WD40-rpts
Query 801 SLGRFVPRRFLLPEYLPYAGIFHERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNAS 880
WD40-rpts
Query 881 VNVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVG 960
WD40-rpts
Query 961 LASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPE 1040
WD40-rpts
Query 1041 ALNSGIEYYWDQLSETVFTVHSSSRSSERPGTSRATWRTDRDMGLMNAIGLQPRNPTTSVTSQGTQTLALQLQNAETQTE 1120
WD40-rpts
Query 1121 REEEEPGAASSGPGEGEGSEYGGSGEDALSRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTESG 1200
WD40-rpts
Query 1201 AARTSSPQPSTSRGLPSEPGQLAERALSPRTASWDQPSTSGRELPQPALSSSSPVPIPVPLASNEGPTMHCNVTNNSHLP 1280
WD40-rpts
Query 1281 EGDGSNRGEAAGPSGEPQNR 1300
WD40-rpts
 6 WD40-repeats found in QUERY=sp_A2AH22_AMRA1_MOUSE (Len=1300): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 39-81 6.12 367.38 0.00070 20.0% 48.98 WD 2: Seg 8 85-124 7.94 442.80 6.7e-05 35.0% 53.57 WD 3: Seg 12 127-164 5.79 353.68 0.00107 20.0% 51.24 WD 4: Seg 16 165-208 5.30 333.48 0.00199 17.5% 55.78 WD 5: Seg 26 303-343 3.11 243.19 0.03239 15.0% -2.23 WD 6: Seg 29 390-428 3.34 252.50 0.02436 20.0% -9.78Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 39-81 WM-K-WEGKRVELPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE WD 2 85-124 -G-K----CVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD WD 3 127-164 -G-G----SESWFTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD WD 4 165-208 WS-RREPFAVVKTASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD WD 5 303-343 CQHP----GILCLCSRCAGTRVPSLLPH-QDSVPPASARATTPSFS WD 6 390-428 -G-P----TRRSLGGPLSSHPSRYHREL-APGLTGSEWTRTVLTLN WD40 Template TG-E----CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD |
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