Input parameters:

  Query = CmaCh07G012360 (Len=1360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh07G012360, Len=1360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALGDLMASRISQSSLEVVSNHLDVCASNHEDDGDLISFRRDSEAASSSYGNAVVTTATTMVYLPQTMVLCELRHDAFEA 80  
WD40-rpts                                                                                      

Query       81 CVPAGPSDCGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPPKALETIGKTLSVQYERWQ 160 
WD40-rpts                                                                                      

Query      161 PRARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVF 240 
WD40-rpts                                                                                      

Query      241 DCSAAGMIVNAFTELHDPSGSRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLRESLDDLLIDKI 320 
WD40-rpts                                                                                      

Query      321 PGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPILPSTHQHHM 400 
WD40-rpts                                                                                      

Query      401 WDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLKAFEVWLDHGSESKKPPEQLPIVLQVLLSQGHRLRALVLLGKFL 480 
WD40-rpts                                                                                      

Query      481 DMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDTLEAYPKQRAMAAF 560 
WD40-rpts                                                                                      

Query      561 VLAVIVDEHRRGQEACIEANLIHVCLKHLRNKTPIDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAHAVFTSLLAE 640 
WD40-rpts                                                                                      

Query      641 PQPEVRASAIFALGTLLDVWSDSSRDGVGDDDCDDDEKIRAETSIVGSLLSVVSDGSPLVRAEVAVALARFAFVHNKHLK 720 
WD40-rpts                                                                                      

Query      721 SIAATYCKPHCNSLLSSLPSLAHLRSTGAAYTNSNQHMPHASIVSSQIGPLLRFGNENSPLVRDGRVSTSSPLANTGVMH 800 
WD40-rpts                                                                                      

Query      801 GSPLSDDSYQPSDSGVLHEDTVSNGAVNHSLPKPLNNALYSQCVSTMCTLANDPSPRIASLGRRVLSIIGIEQVVTKPVK 880 
WD40-rpts                                                                                      

Query      881 SNNSGLKPTDGTAASQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEFRPQLMNSPDSGLADP 960 
WD40-rpts                                                                                      

Query      961 LWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTAAEDGEEIFTRREEREKFALERIAKCQHSPVSKLSNNPIASWDTK 1040
WD40-rpts                                                                               (______

Query     1041 FEMGTKKLLLQPFSPIVVAADEKERIRVWNYEEPALLNSFDNHNFLDKGISKLCLVNELDDSLLLAASCDGSIRIWKDYT 1120
WD40-rpts      __________WD 1_______________)   (___________________WD 2___________________)   

Query     1121 LKGKQKLVTAFSAIQGHKPGVRSVNAVVDWQQQSGYLYAAGETSASIMLWDLDKELLVKPIPSSSDCSISALCASQVHGG 1200
WD40-rpts             (___________________WD 3___________________)   (__________________WD 4___

Query     1201 QFAAGFLDGSVKLYDARTPEMLVCTMRPHIQKVEKVVGIGFQPGLDSSKIVSASQAGDIQFLDIRNQRDKYLTIDAHRGS 1280
WD40-rpts      ______________)(_____________________WD 5_____________________)    (____________

Query     1281 LTALAVHRHAPILASGSAKQLIKVFSLDGDQLGTIKYHPTFMPQKIGSVSCLTFHPYEELLAAGASDACVSIYADDTSQR 1360
WD40-rpts      _____WD 6________________)  (____________________WD 7____________________)      

7 WD40-repeats found in QUERY=CmaCh07G012360 (Len=1360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1034-1070     5.61  346.31  0.00134       17.5%     56.04
  WD 2:  Seg 18  1074-1117     6.01  363.06  0.00080       25.0%     47.52
  WD 3:  Seg 22  1128-1171     5.94  359.97  0.00088       30.0%     44.23
  WD 4:  Seg 25  1175-1215     5.69  349.69  0.00121       17.5%     57.06
  WD 5:  Seg 29  1216-1263     5.30  333.62  0.00198       30.0%     54.47
  WD 6:  Seg 33  1268-1306     6.89  399.19  0.00026       25.0%     56.19
  WD 7:  Seg 37  1309-1354     6.64  389.08  0.00036       25.0%     55.16

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1034-1070   ------IASWDTKFEM-------GTKKL--L-----LQP--F-----SPIVVAADEKERIRVWN
   WD 2 1074-1117   -PA---LLNSFDNHNF-------LDKGI--SKLCLVNEL--D-----DSLLLAASCDGSIRIWK
   WD 3 1128-1171   -VT---AFSAIQGHKP-------GVRSV--N-----AVV--DWQQQSGYLYAAGETSASIMLWD
   WD 4 1175-1215   -EL---LVKPIPSSSD-------CSISALCA-----SQV--H-----GGQFAAGFLDGSVKLYD
   WD 5 1216-1263   ARTPEMLVCTMRPHIQ----KVEKVVGI--G-----FQPGLD-----SSKIVSASQAGDIQFLD
   WD 6 1268-1306   -RD---KYLTIDAHRG-------SLTAL--A-----VHR--H-----APILASGSAKQLIKVFS
   WD 7 1309-1354   -GD---QLGTIKYHPTFMPQKIGSVSCL--T-----FHP--Y-----EELLAAGASDACVSIYA

   WD40 Template    TGE---CLRTLSGHTS-------GVTSV--S-----FSP--D-----GKRLVSGSEDGTIKVWD