Input parameters:

  Query = CmaCh12G007380 (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G007380, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPNRVLLDFQNPIQDAISTIQFAPCSNNLLISSWDSSLRLYDVDNSALRLEAPSEAALLDCCFQDESLALSAGSDGLIR 80  
WD40-rpts         (_________________WD 1_________________)  (________________WD 2______________

Query       81 RYDLQSGISETIGKHDDIATNISYSDQTCQIVTAGLDGKILLWDTRREKCVSFVRNRGSDVVSMSISGFNLIVASGVCVY 160 
WD40-rpts      __)  (_________________WD 3________________)   (_________________WD 4___________

Query      161 SLDLRNIQKPVQLTDSCMKVPVACVSSVPYTEGFAVGSVDGRVALEIACLDQADDIRYIFWCHPKSKGRRKHLESVNDIG 240 
WD40-rpts      _____)(__________________WD 5_________________)               (_________________

Query      241 FNPIHPGAFATGDNAGFVSVWDFQSKRRILELPRFPNSVASLSYNCGGQVLAVASSCTYQEAKEREDPPQVFLHVIEEYN 320 
WD40-rpts      WD 6_________________)   (_________________WD 7________________)                

Query      321 PKSSSASSTG 330 
WD40-rpts                

7 WD40-repeats found in QUERY=CmaCh12G007380 (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       8.82  478.93  2.2e-05       17.5%     55.91
  WD 2:  Seg  5    46-83       6.78  394.66  0.00030       20.0%     53.22
  WD 3:  Seg  9    86-124      9.11  491.12  1.5e-05       27.5%     51.20
  WD 4:  Seg 13   128-166      8.62  470.65  2.8e-05       20.0%     46.70
  WD 5:  Seg 17   167-207      7.85  438.99  7.5e-05       25.0%     55.19
  WD 6:  Seg 22   223-262      8.02  446.09  6.0e-05       22.5%     39.76
  WD 7:  Seg 25   266-304      8.31  457.73  4.2e-05       17.5%     52.63

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     NRVLLD-FQNPIQDAISTIQFAP-CSNNLLISSWDSSLRLYD
   WD 2   46-83     -NSALR-LEAPSEAALLDCCFQD-ESL-ALSAGSDGLIRRYD
   WD 3   86-124    -SGISE-TIGKHDDIATNISYSD-QTCQIVTAGLDGKILLWD
   WD 4  128-166    -EKCVS-FVRNRGSDVVSMSISG-FNLIVASGVCVYSLDLRN
   WD 5  167-207    IQKPVQLTDSCMKVPVACVSSVP-YTEGFAVGSVDGRVALEI
   WD 6  223-262    -HPKSK-GRRKHLESVNDIGFNPIHPGAFATGDNAGFVSVWD
   WD 7  266-304    -KRRIL-ELPRFPNSVASLSYNC-GGQVLAVASSCTYQEAKE

   WD40 Template    TGECLR-TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD