WDRR: WD40 Repeat Recognition
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| JobID: MOSDD1659460044 Submitted: 2022-08-03 01:07:24 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79791298 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G014710 (Len=3237) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G014710, Len=3237): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNIVKGVADLIRRTSSGHIGVSGTGSQANSPYPPSPKIRFSEDGDEAILNELWVRYEKAVDKGERRRMFYVFLKQFIVVY 80
WD40-rpts
Query 81 KNWKPINAGWLPKDASTSVQTMNSSTLDHTVVGCSSGHPSEIILKLIEEVKQLTSVVVEWRSTADILGASTGLNLTSEGF 160
WD40-rpts
Query 161 LILDALAIVMRSMHNCKIFGYHSGIQKLTALMKGAVIQLKTIAGELSGDEGLSNIVVENTRLLQLVLINVVSIVHSFIDI 240
WD40-rpts
Query 241 DSLLCAEDHSLSMNIPSCEERLMWRQKAVVSVMEAGGINWLVELLRVTRRLNIKEQNIDVELQCLAIKILYSALSENPRG 320
WD40-rpts
Query 321 QNHFKSIGGLEVLLDGLGLPSKIVLAPKDLAGADQKRDESSFLNILQLHVLSLAVLREAVFGNLNNMQFLCENGRIHKFA 400
WD40-rpts
Query 401 NSFCSPAFTLQEEFKLQIGELSGQQDFRWPSLDCKYNVAAQSGECSVLPLANLTHIQSWNEYVVKLCRVLCSFLLAPDDV 480
WD40-rpts
Query 481 KPHHPQASSIRIMTPVSLVYGDLSIKWVMRVLVAVFPCIKACSNQNDLPAHLRILANALQHSVLAAFRKFLVSSPVSLEI 560
WD40-rpts
Query 561 FREEGIWDLFFSENFFYFGPAFEEFTLESWTNNDDFLEKPETYYATSSNCPPKVDGVDMIQIEVISFVEFAATSCGSAHN 640
WD40-rpts
Query 641 LPELSALLDTLEQSACNSEVAVALSKSLLRILQISPERTVASFKTLNAIPRLLKVACVQAQEHRRSGNAISSDINFVEGI 720
WD40-rpts
Query 721 QPRSNQGHDSRETAQSCLTCLETIMELFTEFSSKGDDAQKLVLLNPTSIDCLFELFWEESLRSRVLKHTLVLIKIKAISE 800
WD40-rpts
Query 801 EDHKAKLYICTKYLETFAQIKEREKSSTELSIDLLVGIREMVLNDPQYYQALFRDGECFLHIVSLLNGNVDKEIGEKLVL 880
WD40-rpts
Query 881 NVLQTLTCLLAKNEVSKASFRALAGKGYQTMQTLLLDFCQCHPSGALLGVLLDMLVDGTFDLKLCPIIQNEDVIILYLSV 960
WD40-rpts
Query 961 LQKSSEPLQHQGLNIFQQLLRDSISNRASCVRAGMLNFLLDWFGQDNNDGIIVKIAQLVQVIGGHSVSGKDIRKIFALLR 1040
WD40-rpts
Query 1041 SEKVGRQKRYCSLLMASILSMLSEKGPTAFFDMSGNNSGILIKTPVQWPLNKGFSFSCWLRVENFPQHGTMGLFSFLTEN 1120
WD40-rpts
Query 1121 GRGCSAVLAKDKFIYESINLKRQSVRLHVNIVRKKWHFLCITHSIGRAFSGGSLLRCYVDGDLISSERCRYAKVNEPLTN 1200
WD40-rpts
Query 1201 CTVGAKFSASLSEEVDTKESVEAAFPFLGQIGPVYLFSDAISSEQVQGIHSLGPSYMYSFLDNDIATFSENPLPRGILYA 1280
WD40-rpts
Query 1281 KESLASKMIFGLNAQASSGKSLFNVALTLDQISEKNYFEAIAMVGTELCSRRLLQRILYCVGGVTVLFPLISQSDRYESE 1360
WD40-rpts
Query 1361 NNGQFCQNVNIAGTKECLTAEVIELIACVLDENLPSQHQMHLLSGFSILGFLLQSVNPQQLNMETLAALKHLFNVIANCG 1440
WD40-rpts
Query 1441 FSELLIQDALSSIFLNLSIWIYSPYEVQRELYLFLIQQFDNEPRLLKNLCRLPLILNMIRKFYCDKAKLKLASGSKTSLH 1520
WD40-rpts
Query 1521 PPGGVLGPTRDEIRKIRLLLLSLGEMSIRQNIVAIDIKALIAFFERSQDVTCIEDVLHMVIRAISQKTVLASFHEQVSFI 1600
WD40-rpts
Query 1601 GGCPVFINLLQREFEPIRLLSLQFLGRLLVDLPSEKKGLRFFNLPSGKPKPISDSHKKTSSRMQPLFSAISDRLFRFPPT 1680
WD40-rpts
Query 1681 DNLCAALFDVLLGGASPKQVLQKQNQSDVQKNKSLGSHFAVPQSLVLIFKFLCSCEEISSRLKIITDLLDLLDTYPSNIE 1760
WD40-rpts
Query 1761 AFMEYGWNALLTASVKLDALQQYRVESVGRVDNKINEQSSIRKLFCVVLLHYISSVKGGWQQLEETTTFLIMQSEKGQVS 1840
WD40-rpts
Query 1841 FKYFLRDMYEDLIQMLVDLSSGENIFVTQPCRDNTLYLLRLVDDMLIDELDHQLPILANVFDVSPESMELELHISALHDV 1920
WD40-rpts
Query 1921 LQGESDDQTARYAQHQMDVKEDKMDEKWWRLYDKLWIIISEINGKGPNKSLPKSSAGGPTFGQRARGLVESLNLPAAEMA 2000
WD40-rpts
Query 2001 AVVVSGGIGSALGGKPNKIVDKAMLLRSEKFPRIIFRLVMLYICKAPLEKASRCVQQIISLLPSLVVTDDEQNKNRLLLF 2080
WD40-rpts
Query 2081 IWSLLAVRSQYRTLNTDARIHVISHLIRETVSCCKSILANSMISTDDSSDNGAFLKEAGYIHNLIQIERVTAAIADEVNY 2160
WD40-rpts
Query 2161 MKSSKIDHQKQLHELRLRMEESLSNESINQKVFEEEMQSSLTSILIADDNRKAAFQLAYEEVQQNIAEKWMHMFRALIDE 2240
WD40-rpts
Query 2241 RGPWSANSSPNISSTHWKLDKTEDMWRRRPKLRKNYHFDEKLCHPPSISPNDDINNAENVKKSSIVGHMPEQMKRFLLKG 2320
WD40-rpts
Query 2321 AMKITDEGNSEPIENDVEPCEPNASNLKDSSDGQYLEQVKDVGEWKDIVQDRKDTLFSPVTEESEVLTSTPCVLVTSKRK 2400
WD40-rpts
Query 2401 LAGYLAVMKNALHFFGEFLVEGTGGASTFKNFEALKSSDLTKLDQKPKSLKWPLYLQLDSTKGTVVDDVEVMNDDGNLKR 2480
WD40-rpts
Query 2481 PLKNFRRHRRWNIGKIKGVHWTRYLLRYTAIEIFFSDSVPPVFLNFDSPKGAKDIGTLIVSSRNDYLFPKGSSRNQSGVI 2560
WD40-rpts
Query 2561 SFVDRRVALEMAETARESWKRRDITNFEYLMILNTLSGRSYNDLTQYPVFPWVLADYSSEVLDFNKSSTFRDLSKPVGAL 2640
WD40-rpts
Query 2641 NPKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLHRNLQGGKFDHADRLFQSIEATYRNCLSNTSD 2720
WD40-rpts
Query 2721 VKELIPEFFYMPEFLCNSNHYHLGVKQDGEPLGDVVLPPWAKGSPEVFISKNREALESEYVSSNLHHWIDLVFGYKQRGK 2800
WD40-rpts
Query 2801 PAVEAANVFYYLTYEGAADLGTMEDDFQRSAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLHFAPGSINLTSIISCS 2880
WD40-rpts
Query 2881 THRPSAILHISMLDTHIVLVSQGLVLTVKMWLTTQLQYGGNFTFSGSQEPFFGVGSDILSPRKIGSPLAENFELGGQCFA 2960
WD40-rpts
Query 2961 TMPTPAENFLVSCGNWDNSFHIISLTDGRLLQSIRQHSDVVSCAAVTSDGSILATGSYDTTVMVWNVLRGRFSEKKARNT 3040
WD40-rpts (_________________WD 1________________)
Query 3041 QSEPPRKDNVIAETPFHVLCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYIRSLHHPSGCGLSKLVASRHGRV 3120
WD40-rpts (_____________WD 2____________) (_________________WD 3____
Query 3121 VFYADDDLSLHLYSINGKHLAASESNGRLNCVQLSQCGEFLVCAGDHGQIVVRSMNSLEVISRYNGIGKVIVSLTVTTEE 3200
WD40-rpts _____________)(_________________WD 4_________________) (________________WD 5__
Query 3201 CFLAGTKDGSLLVYSIENPQLRKASPSRNTKTKPSAV 3237
WD40-rpts ______________)
 5 WD40-repeats found in QUERY=CmaCh01G014710 (Len=3237): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 35 2988-3026 7.07 406.65 0.00021 32.5% 58.05 WD 2: Seg 40 3061-3091 3.85 273.89 0.01261 25.0% 44.09 WD 3: Seg 43 3095-3134 3.21 247.16 0.02869 17.5% 57.37 WD 4: Seg 47 3135-3174 4.18 287.45 0.00830 22.5% 55.45 WD 5: Seg 51 3178-3215 3.66 265.72 0.01623 20.0% 52.03Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2988-3026 -GRLLQSIRQHSD-VVSCAAVTSDGSILATGSYDTTVMVWN WD 2 3061-3091 ---------GHDD-IITCLYVSVELDIVISGSKDGTCIFHT WD 3 3095-3134 -GRYIRSLHHPSGCGLSKLVASRHGRVVFYADDDLSLHLYS WD 4 3135-3174 INGKHLAASESNG-RLNCVQLSQCGEFLVCAGDHGQIVVRS WD 5 3178-3215 -LEVISRYNGIGK-VIVSLTVTTEECFL-AGTKDGSLLVYS WD40 Template TGECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |