Input parameters:

  Query = CsaV3_1G008210 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G008210, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIMEYHQTFHNSDTYFDQSYSSSSFSTSSSSSCQTTFKGHSSYISSLTLAGKFLYSGSSDREIRSWRRNLSQNCEENQE 80  
WD40-rpts                                     (________________WD 1_______________)            

Query       81 EFQNNMVTAGHGAVKSLVVSSDKLYSAHQDHKIRVWKIFNDFDHHQKYTRLATLPTLGDRTAKLLTPNNQVQIRRHKKCT 160 
WD40-rpts      (________________WD 2_______________)(____________WD 3___________)         (____

Query      161 WVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESVAGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDG 240 
WD40-rpts      ____________WD 4________________)   (_________________WD 5________________)     

Query      241 KRHFLVQTLEKHSSGINALALTEDGSVLFSGACDRSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLNFVCSGSADKT 320 
WD40-rpts        (_________________WD 6________________)       (________________WD 7___________

Query      321 IRIWKKAVAGNYVCLRVLEGHNGPVKCLAAAVDRFNPNDSSFMVYSGSLDCDIKAWQISVPLA 383 
WD40-rpts      ____)      (____________________WD 8____________________)      

8 WD40-repeats found in QUERY=CsaV3_1G008210 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    32-68       8.06  447.70  5.8e-05       37.5%     48.94
  WD 2:  Seg  8    81-117      6.19  370.20  0.00064       25.0%     45.05
  WD 3:  Seg 12   118-146      2.99  238.04  0.03790       12.5%     22.82
  WD 4:  Seg 15   156-193      9.03  487.56  1.7e-05       32.5%     51.12
  WD 5:  Seg 19   197-235      7.54  426.30  0.00011       35.0%     51.78
  WD 6:  Seg 23   243-281      9.63  512.59  7.7e-06       32.5%     57.09
  WD 7:  Seg 27   289-325      7.10  407.88  0.00020       27.5%     52.95
  WD 8:  Seg 31   332-377      7.60  428.41  0.00010       37.5%     52.03

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-68     -SSCQTTFKG-HSSYISSLTLA---------GKFLYSGSSDREIRSWR
   WD 2   81-117    -EFQNNMVTA-GHGAVKSLVVSSD-------K--LYSAHQDHKIRVWK
   WD 3  118-146    ---IFNDFDH-HQKYTRLATLPTL-------G--------DRTAKLLT
   WD 4  156-193    HKKC--TWVH-HVDTVSALALSND-------ESLLYSVSWDRTLKIWR
   WD 5  197-235    -FKCLESVAGAHDDAINAVALAGD-------GD-VYTGSTDKRIKVWR
   WD 6  243-281    -HFLVQTLEK-HSSGINALALTED-------GSVLFSGACDRSVLVWE
   WD 7  289-325    -MELVGVLRG-HSKAILCLAVVLN---------FVCSGSADKTIRIWK
   WD 8  332-377    -YVCLRVLEG-HNGPVKCLAAAVDRFNPNDSSFMVYSGSLDCDIKAWQ

   WD40 Template    TGECLRTLSG-HTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD