WDRR: WD40 Repeat Recognition
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| JobID: MMUWE1659463024 Submitted: 2022-08-03 01:57:04 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79755094 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh09G008650 (Len=836) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh09G008650, Len=836): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MWIAMEASFDPLRNRDDISGVCEEDILADPYLRSLKGNDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVH 80
WD40-rpts
Query 81 NVRPSCFVMSSFNHVTFIESASCSDSGSDSLEEDGLSSQMAEVKTSSSPFPSSLGSEGFRSVMAEVNALSETSCMQSGSV 160
WD40-rpts
Query 161 YAAQVSLNEGSGECRRKDSRHVEETENKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSRE 240
WD40-rpts
Query 241 GKSRIMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSNRPKLSELLQSEFLNESKDELEERETAIELRKRIEEQDLLLE 320
WD40-rpts
Query 321 YLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGLHPDLSKDNCLSLNLPSMTPAGLGSRKRFRPGILVHNI 400
WD40-rpts
Query 401 EACGDNVDDSEKSSSDNENEQGVLFKSSRLMKNFKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSVNN 480
WD40-rpts (_____________WD 1____________) (__
Query 481 LASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIV 560
WD40-rpts _______________WD 2________________) (________________WD 3________________)
Query 561 NEDRDIHYPVVEMASRTKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSD 640
WD40-rpts (_________________WD 4_________________) (_________________WD 5__________
Query 641 DGSVKLWSINQGSSIGTIRTKANVCCVQFPADSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLV 720
WD40-rpts _______) (_________________WD 6________________)(__________________WD 7_______
Query 721 SASTDNTLKLWDLSMCTSRVIDSPVLSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSSH 800
WD40-rpts ___________) (_________________WD 8________________)(___________________
Query 801 EMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 836
WD40-rpts _____WD 9________________________)
 9 WD40-repeats found in QUERY=CmaCh09G008650 (Len=836): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 444-474 3.43 256.23 0.02173 5.0% 6.49 WD 2: Seg 9 478-516 5.38 336.80 0.00180 15.0% 42.37 WD 3: Seg 13 518-555 7.83 438.21 7.7e-05 25.0% 47.96 WD 4: Seg 16 566-605 6.28 374.21 0.00056 20.0% 49.16 WD 5: Seg 20 609-648 8.71 474.32 2.5e-05 35.0% 55.68 WD 6: Seg 24 652-690 6.52 384.18 0.00041 32.5% 56.13 WD 7: Seg 28 691-732 7.95 442.92 6.7e-05 40.0% 52.93 WD 8: Seg 32 742-780 7.69 432.27 9.3e-05 17.5% 54.84 WD 9: Seg 36 781-834 5.69 349.81 0.00120 17.5% 47.26Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 444-474 --------------------------MRGRVNKPSGRQF-V-KH-SSISSDGRGSVVLTE WD 2 478-516 -VN---NL--------------ASKESCNDNRQGGWISP-F-LE-GLCKYLSFSKLKVKA WD 3 518-555 LKQ-------------------GDLLNSSNLVCSLSFDR-D-GE-FFATAGVNRKIKVFG WD 4 566-605 -IH---YP--------------VVEMASRTKLSSVCWNR-Y-IKSQIASSNFEGVVQVWD WD 5 609-648 -SQ---VV--------------TEMGEHERRVWSIDFSSAD-PT-ILASGSDDGSVKLWS WD 6 652-690 -GS---SI--------------GTIRTKAN-VCCVQFPA-DSGR-SLAFGSADHKIYYYD WD 7 691-732 MRNIRVPL--------------CTFTGHNKTVSYVKY-I-D-SS-TLVSASTDNTLKLWD WD 8 742-780 -DS---PV--------------LSFTGHMNIKNFVGLSV-S-DG-YIATGSETNEVFIYH WD 9 781-834 KAF---PMPALSYKFQMDPLSSHEMDDSAQFISSVCWRG-Q-SS-SLVAANSTGHIKILE WD40 Template TGE---CL--------------RTLSGHTSGVTSVSFSP-D-GK-RLVSGSEDGTIKVWD |
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