WDRR: WD40 Repeat Recognition
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| JobID: MIWI71659503187 Submitted: 2022-08-03 13:06:27 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748623 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G018880 (Len=776) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G018880, Len=776): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMNEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIE 80
WD40-rpts
Query 81 AQQMKQKEQQLQMQQLQLMRQAQLQRRDGTHPSLGGSLNAVNSEGMLGQPTASALAARMYEERMKNPNAMDSETSQPLLD 160
WD40-rpts
Query 161 ARVMKPATNHPGQLGNPGSVNAALQQMQTRGQQPTDIKPDVSMGGTQRSLPMDPSSVYGSGLMQSKPGIGNTGLNSGVNS 240
WD40-rpts
Query 241 LPLKGWPLAGIEQIRPGLGAQVQKPFLQSANQFQLLQQQQQQLLAQVQAQGSLGSSPMYSDMDPQRFRGLPRNNLNAKDG 320
WD40-rpts
Query 321 QPIANDGSIGSPMQSTSSKMNIPQMQQSSSQQQDGLHPQQVQQNRKRKGPSSSGAANSTGTGNTLGPNSQPSTPSTHTPG 400
WD40-rpts (________________WD 1_______________)
Query 401 DGAVIAPNMQNVNSMPKNMLLYGNDGTGGLASSTNQLDDMEHLGDIGSLDDNVESFLSHDDGDGRDLFGTLKRNPSEHAP 480
WD40-rpts (_________________WD 2________________) (_________
Query 481 ENSKGLSFSEVGSMRKSNSKVVSCHFSSDGKLLASAGHDKRVVIWNMETLQTETTPEEHTLIITDVRFRPNSTQLATSSF 560
WD40-rpts ________________WD 3_________________________) (_________________WD 4_________
Query 561 DTTIRLWDAAQPTYSLHAYTGHTSQVASLDFHPKKNEIFCSCDANNEIRYWHVRQGSTHVSKGGNGSTQVRFQPRIGQLL 640
WD40-rpts _______)(___________________WD 5___________________)(_________________WD 6______
Query 641 AAASDSVVSIIDFESDRLTLSLKGHSSDVHSICWDTNGDYLASVSRDSVKVWSVASGECIHELSSSGNMFHSCVFHPSYS 720
WD40-rpts ___________) (________________WD 7________________) (_________________WD 8__
Query 721 SLLVIGGYQSLELWNMAENKCMTMPAHECMISSLAQSPVTGMVASASHDKSVKIWK 776
WD40-rpts ______________)(__________________WD 9_________________)
 9 WD40-repeats found in QUERY=CmaCh14G018880 (Len=776): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 362-398 5.12 326.25 0.00249 17.5% 14.31 WD 2: Seg 4 407-445 4.18 287.21 0.00836 10.0% 21.41 WD 3: Seg 8 471-526 8.13 450.60 5.3e-05 30.0% 57.10 WD 4: Seg 12 530-568 9.69 515.11 7.1e-06 35.0% 55.01 WD 5: Seg 16 569-612 7.72 433.58 8.9e-05 30.0% 49.18 WD 6: Seg 20 613-652 7.94 442.54 6.8e-05 22.5% 53.85 WD 7: Seg 24 656-693 8.34 459.14 4.0e-05 35.0% 52.77 WD 8: Seg 28 697-735 8.71 474.48 2.5e-05 25.0% 58.26 WD 9: Seg 32 736-776 8.55 467.77 3.1e-05 27.5% 52.86Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 362-398 ------------------Q---QNRKRKGPSSSG-AANSTGTGN---T-LGPNSQPSTPSTHT WD 2 407-445 PN-----------------------MQNVNSMPKNMLLYGNDGTGGLA-SSTNQLDDMEHLGD WD 3 471-526 LKRNPSEHAPENSKGLSFS---EVGSMRKSNSKVVSCHFSSDGK---L-LASAGHDKRVVIWN WD 4 530-568 -L----------------Q---TETTPEEHTLIITDVRFRPNST---Q-LATSSFDTTIRLWD WD 5 569-612 AA----------------QPTYSLHAYTGHTSQVASLDFHPKKN---EIFCSCDANNEIRYWH WD 6 613-652 VR----------------Q---GSTHVSKGGNGSTQVRFQPRIG---Q-LLAAASDSVVSIID WD 7 656-693 -D----------------R---LTLSLKGHSSDVHSICWDTNGD---Y-LASVSRD-SVKVWS WD 8 697-735 -G----------------E---CIHELSSSGNMFHSCVFHPSYS---S-LLVIGGYQSLELWN WD 9 736-776 MA----------------E--NKCMTMPAHECMISSLAQSPVTG---M-VASASHDKSVKIWK WD40 Template TG----------------E---CLRTLSGHTSGVTSVSFSPDGK---R-LVSGSEDGTIKVWD |
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