WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: MIQH91659459471 Submitted: 2022-08-03 00:57:51 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79792346 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G000720 (Len=509) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G000720, Len=509): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKGGDEAMPAPAASSQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKMGDHLATGDRGGRVVLFERTDRKDHGGTRKDL 80
WD40-rpts (_________________WD 1_________________) (__________
Query 81 EKKDHSVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISSMNVD 160
WD40-rpts _______WD 2________________)________________WD 3________________)
Query 161 ASKAVGNGCIASSSSSSPHLPNGGSCDGLYNHPSNDLLGAISSLRLQLVTSQETSLLARCRRVYAHAHDYHINSISNNSD 240
WD40-rpts (______________________WD 4_____________________)(____________________WD 5____
Query 241 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITAAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKL 320
WD40-rpts _______________) (________________WD 6________________)(____________
Query 321 FEEPEAPGSRSFFTEIIASISDIKFGKNGRYILSRDYMTLKLWDINMDSGPVTTFQVHEYLRPKLCDLYENDSIFDKFEC 400
WD40-rpts ______________WD 7_________________________) (___________________W
Query 401 CLSGDGLHITTGSYSNLFRVFGSSPGSTEATTLEASKNPTRRQVQTPSRPSRSLGSSLTRVVRRGSESPGVDANGNPFDF 480
WD40-rpts D 8__________________) (_________________WD 9________________) (_________
Query 481 TTKLLHLAWHPVENSIACAAANSLYMYYA 509
WD40-rpts ________WD10________________)
 10 WD40-repeats found in QUERY=CmaCh01G000720 (Len=509): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 27-66 9.07 489.23 1.6e-05 12.5% 43.15 WD 2: Seg 5 70-108 3.67 266.39 0.01590 2.5% 19.34 WD 3: Seg 7 108-145 4.95 319.19 0.00311 17.5% 43.41 WD 4: Seg 12 163-211 4.32 292.91 0.00701 12.5% 36.52 WD 5: Seg 15 212-256 6.03 363.81 0.00078 25.0% 48.61 WD 6: Seg 20 270-307 6.31 375.24 0.00055 22.5% 43.70 WD 7: Seg 23 308-364 5.25 331.64 0.00211 17.5% 42.35 WD 8: Seg 27 380-422 5.64 347.77 0.00128 17.5% 42.53 WD 9: Seg 30 427-465 5.67 348.91 0.00124 12.5% 42.00 WD10: Seg 32 471-509 3.45 257.14 0.02113 5.0% 36.92Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 27-66 GER------------------TAGE------EVQEVD---------IISAIEFDK--M-GDHLATGDRGGRVVLFE WD 2 70-108 -RK------------------DHGG------TRKDLE---------KKDHSVSRH--P-EFRYKTEFQSHEPEFDY WD 3 108-145 YLK------------------SLE----------IEE---------KINKIRWCQTAN-GALFLLSTNDKTIKFWK WD 4 163-211 KAV------------------GNGC------IASSSSSSPHLPNGGSCDGLYNHP--S-NDLLGAISSLRLQLVTS WD 5 212-256 QET------------------SLLARCRRVYAHAHDY---------HINSISNNS--D-GETFISAD-DLRINLWN WD 6 270-307 ---------------------KPAN------MEDLTE---------VITAAEFHP--THCNMLAYSSSKGSIRLVD WD 7 308-364 LRQSALCDSHAKLFEEPEAPGSRSF------FTEIIA---------SISDIKFGK--N-GRYILSRD-YMTLKLWD WD 8 380-422 YLR---------------PKLCDLY------ENDSIF---------DKFECCLSG--D-GLHITTGSYSNLFRVFG WD 9 427-465 -ST------------------EATT------LEASKN---------PTRRQVQTP--S-RPSRSLGSSLTRVVRRG WD10 471-509 -VD------------------ANGN------PFDFTT---------KLLHLAWHP--V-ENSIACAAANSLYMYYA WD40 Template TGE------------------CLRT------LSGHTS---------GVTSVSFSP--D-GKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |