Input parameters:

  Query = CsaV3_3G050020 (Len=304)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G050020, Len=304):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRSSLSSPSSPTPQIQNSEKLTQQSPTPLRCEWDFTLASVVSSPTNCAASDTLGVVEFDPSDSLIATAGIARKIRGYRLH 80  
WD40-rpts      (______________WD 1______________)     (_________________WD 2________________)  

Query       81 NLLPQDIDHNATITQLDHTRASDFCICTPAKLSSLRWKPNANGRILGSGDYDGVVMEYDLEMKVPIFERDEHGGRRVWSV 160 
WD40-rpts                        (__________________WD 3_________________)   (_________________

Query      161 DYSTVEPVVGASGSDDGTVQVWDTRCESGECVAVVQPSVVRSAVCCVEFNPFGGGLVAVGCADRKAYGYDRRKMREPVVV 240 
WD40-rpts      _WD 4_________________)     (__________________WD 5__________________)    (_____

Query      241 FEGHGKTVTYVKFVDGGTVVSASTDGSLKMWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGA 304 
WD40-rpts      ___________WD 6________________)                                

6 WD40-repeats found in QUERY=CsaV3_3G050020 (Len=304):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       6.49  382.74  0.00043       15.0%     15.03
  WD 2:  Seg  3    40-78       7.87  439.84  7.3e-05       12.5%     46.80
  WD 3:  Seg  7    99-139      6.49  382.92  0.00043       22.5%     46.24
  WD 4:  Seg 11   143-183      7.18  411.14  0.00018       35.0%     55.08
  WD 5:  Seg 15   189-230      6.94  401.31  0.00024       30.0%     58.30
  WD 6:  Seg 19   235-272      8.29  457.09  4.3e-05       40.0%     51.38

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ------MRSSLS--S-PSSPTPQIQ--NSEKL-TQQSPTPLRCEWD
   WD 2   40-78     VVS-SPTNCAAS--D-TLGVVEFDP--SDSLI-ATAGIARKIRGYR
   WD 3   99-139    -TRASDFCICTP--A-KLSSLRWKPNANGRIL-GSGDYDGVVMEYD
   WD 4  143-183    -KVPIFERDEHG--GRRVWSVDYST--VEPVVGASGSDDGTVQVWD
   WD 5  189-230    -GECVAVVQPSVVRS-AVCCVEFNP-FGGGLV-AVGCADRKAYGYD
   WD 6  235-272    -REPVVVFEGHG--K-TVTYVKFV---DGGTV-VSASTDGSLKMWK

   WD40 Template    TGECLRTLSGHT--S-GVTSVSFSP--DGKRL-VSGSEDGTIKVWD