WDRR: WD40 Repeat Recognition
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| JobID: MGD9V1659504745 Submitted: 2022-08-03 13:32:25 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746888 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh17G012070 (Len=3596) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh17G012070, Len=3596): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKWVTLLKDIKEKVGLTPSHGSAPSASSSSSVHSSSAHDNHAPYSARRPDSASSPARSRHELELDFKRCWEEFRSSSSEK 80
WD40-rpts
Query 81 DKEAALNMTVDTFCRLVKQHANVAQLVTLIVETHIFSFVVGRAFVTDIEKLKISSKTRSLDVVKVLKYFTEVAEDVICPG 160
WD40-rpts
Query 161 ANLLTAVEVLISGPIDKQSLLDSGIFCCLIHILNALLDPDEANQRERTASYEEKSVLGEDHNGRGGQGRRLEVEGSVVHI 240
WD40-rpts
Query 241 MKALATHPSGAQSLIEDDSLQMLFQMVVNGSLIAFSLYKEGLVPLHNIQLHRHAMQISNLLLVNDSGSTAKYIRKHHLIK 320
WD40-rpts
Query 321 ILLMAVKDYNPNCGDSAYTMGIVDLLLECVRLSHRPEASGINLREDIRNAHGYHFLVQFALTLSTLPTGPASQSIKSSPP 400
WD40-rpts
Query 401 HDHIQAAYVSQISDKEKQDYMERDASSLQLSPTLSRLLDALVNLAQTGPQESECSSTGKRSKSTHSRSTDHSRSKTSSSD 480
WD40-rpts
Query 481 RITDDLWEEGNNKVKDLEAVQMLQDIFLKADNRELQAEVLNRMFRIFSSHLENYKLCQQLRTVPLLILNMAGFPSSLQEI 560
WD40-rpts
Query 561 ILKILEYAVTVVNCVPDQELLSLCCLLQQPIMSELKHTILSFFVKLLSFDHHYKKVLREVGVLEVLLDDLKQHKFFQGPD 640
WD40-rpts
Query 641 QRVGNFPQPSSNSSFKKHLDNKDTILASPKLLESGVSGKFPIFEVQSTATVAWDCIVSLLKKAEVSQMSFRSSNGVAIVL 720
WD40-rpts
Query 721 PFLVSNIHRQGVLRLLSCLIIEDTAQAHPEELSAIVEILKSGMVTSISGSQYGLHSEAKCETMGTLWRILGVNNSAQRIF 800
WD40-rpts
Query 801 GEVTGFSLLLTTLHSFQRGGDSYQCPVEDRIKVFKYLMRVATAGVHDNALNRTKLHTVILSQTFSDLLSESGLICVEFER 880
WD40-rpts
Query 881 KVIQLLLEVSLEMVLPPYFKLEDAPSSSSMENNSSSFNLITPSGSFHPNKERVYNAGAIRVLIRLLLLFTPKVQLEVLGI 960
WD40-rpts
Query 961 IEKLARAGPFNKENLTSVGCVELLLETIRPFLLGSSPLLAYTLKIVEVLGAYRLSASDLQMLIRFVLQLRILKSGHILID 1040
WD40-rpts
Query 1041 MMERLAHMEDMASESLAMAPFIEMDMSKIGHASIQVSLGERSWPPAAGYSFVCWFQFNNFLKSQGKEFELSKVGSSKRLT 1120
WD40-rpts
Query 1121 SKSAHPQEQQILRIFSVGAANSDNTFYAELYLQEDGILTLATSNSSSLSFSGIELEEGRWHHLAVVHSKPNALAGLFQAS 1200
WD40-rpts
Query 1201 IAYVYLNGKLKHTGKLGYAPSPVGKPLQVNIGTPVACAKVSDMHWKLRSCYLFEEVLTPGCICFMYILGRGYRGIFQDTD 1280
WD40-rpts
Query 1281 LLRFVPNQACGGGTMAILDSLDADLALTHNMQKHEGANKLGDTRGDGSGIVWDMERLGNLSLQLSGKKLIFAFDGTSGEA 1360
WD40-rpts
Query 1361 MRASGVLSMLNLVDPMSAAASPIGGIPRFGRLHGDVFICKQCIIGNTIRPVGGMTVILALVEASETRDMLHMALTLLACA 1440
WD40-rpts
Query 1441 LHQNPQNVRDMQTYRGYHLLALFLHRRMSLFDMQSLEIFFQIAACEASFAEPKKLESVHTNFLSISSFRETSYDELSLSK 1520
WD40-rpts
Query 1521 LRDEVSSNGSHGDLDDFSALKDSYSHISELENPEVPGETSNCVVLSNPDMVEHVLLDWTLWVTAPVTIQIALLGFLEHLV 1600
WD40-rpts
Query 1601 SMHRYRNHNLTVLRRINLVQHLLVTLQRGDVEVPVLEKLVVLLGVILEDGFLVSELELVVKFVIMTFDPPQLTSKRPILR 1680
WD40-rpts
Query 1681 ESMGKHVIVRNMLLEMLIDLQVTIKSEDLLEQWHKIVSSKLITYFLDEAAHPSSMRWIMTLLGVCLTSSPTFALKFRTSG 1760
WD40-rpts
Query 1761 GYQGLVRVLPNFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHALMPSDGSFMELKFVDLLEPVIAMAKSTFDRLSVQT 1840
WD40-rpts
Query 1841 MLAHQNGNLSQASAGLVAELAEGNADNAGELQGEALMHKTYAARLMGGQASAPAAATSVLRFMVDLAKMCHPFSAVCRRT 1920
WD40-rpts
Query 1921 DFFESCVDLYFSCVRAACAVKMAKELSLKTEDKNSNDCDDASSSQNTFTSMPQEQDLSVKTSISVGSFPQGQASTSSDDT 2000
WD40-rpts
Query 2001 VAPQNESSHKEVNNTIPSPQLPRKAEHDFQVAESLEGENIDQESVTSSTNEFNIRTRKDAVEPSQPIDSHSSVSLNLIDS 2080
WD40-rpts
Query 2081 PILSEKSNYRVPLTHSSSPVIALTSWLGSSSNSELKPPSVAPPSVESFASAVAFDPSSDLKFTSQGHPAANTFFSVSPTQ 2160
WD40-rpts
Query 2161 LLEMDDSGYGGGPCSAAATAVLDFMAEVLSDILTEQIKAAPVVESILENVPLYVDTESMLVFQGLCLSRLMNFLERRLLR 2240
WD40-rpts
Query 2241 DDEEDEKKLDKIRWSANLDAFCWMIVDRVYMGAFPQPAGVLKTLEFLLSMLQLSNKDGRIEISPSGKGLLSIARGNKQLD 2320
WD40-rpts
Query 2321 AYVHSILKNTTRMILYCFLPSFLTSIGEDGLLSSLGLLMEPKKRSFNSSYHDDSGIDICTVLQLLVAHRKIIFCPSNVDT 2400
WD40-rpts
Query 2401 DLNCCLCVNLITLLRDSRQYVQNMAVDVVRYLLVHRRPAFEDFLVARSNFGQSSDVLHGGFDKLLTENLSDFFDWLQTSE 2480
WD40-rpts
Query 2481 PMVNKVMENCAAIMWGQYISGSGKFPGVRIKAIEGRRKKEMGRRSRDISKLDMRHWEQVKERRYALDLLRNSMSTELRVL 2560
WD40-rpts
Query 2561 RQDKYGWVLHAESEWKSHLQQLVHERGIFPISISSVKEDSEWQLCPIEGPYRMRKKLERSKLKIDTIQNALDGKFELKEA 2640
WD40-rpts
Query 2641 ELIKGGNGLDASDRDTEPYFHLLNDNAKQNDSDSDLFEEPLFESDDVRDEASVKNGWNDDRASSANDASLHSALEFGAKS 2720
WD40-rpts
Query 2721 SAVSIPLAESIQGRSDLGSPRQSSSTKIDEVKVSDDKYVKELHNDGEYLIRPYLEPLEKIRFRYNCERVIGLDKHDGIFL 2800
WD40-rpts
Query 2801 IGELCLYVIENFYINDSGCICEKECEDELSVIDQALGVKKDCMGNMDLQSKSTSSWGGTVKSWSGGRAWAYSGGAWGKEK 2880
WD40-rpts
Query 2881 VGSSGNLPHPWRMWKLDSVHEILKRDYQLRPVAVEIFSMDGCNDLLVFHKKEREEVFKNLVAINLPRNSMLDTTISGTTK 2960
WD40-rpts
Query 2961 QESSEGSRLFKIMAKSFSKRWQNGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWVLADYESENLDLTNPKTFRMLAKPMG 3040
WD40-rpts
Query 3041 CQTSEGEEEFKKRYESWDDPEVPKFHYGSHYSSAGIVLFYLLRLPPFSAENQKLQGGQFDHADRLFNSIRDTWLSAAGKG 3120
WD40-rpts
Query 3121 NTSDVKELIPEFFYMPEFLENRFNLDLGEKQSGEKVGDVVLPPWANGSAKEFIRKHREALESDFVSENLHHWIDLIFGCK 3200
WD40-rpts
Query 3201 QRGKAAEEATNVFYHYTYEGSVDIDSVTDPAMKASILAQINHFGQTPKQLFLKPHVKRRGDRKFPHPLKHSNLLVPHEIR 3280
WD40-rpts
Query 3281 KSLSCVTQIVTLNEKVLVAGSNTLLKPRSYTKYVAWGFPDRSLRFLSYDQDRLLSTHENLHEGNQIQCAGVSHDGRILVT 3360
WD40-rpts (___________________WD 1_________
Query 3361 GADDGLVWVWRITKHAPRLVRKLQLEKAFSAHTAKITCLYVSQPYMLIASGSDDCTVIIWDLSSLVFVRQLPKFPTAVSA 3440
WD40-rpts __________) (_________________WD 2________________)
Query 3441 IFVNDLTGEVVTAAGILLAVWSINGDCLAMVNTSQLPSDSIFSITSGTFSDWMNTNWYATGHQSGAVKVWQKVHYSNPAS 3520
WD40-rpts (_________________WD 3________________)
Query 3521 SQVKSTGSSMVGLNLENKVPEYRLILHKVLKFHKHPVTALHLTSDLKQLLSGDSSGHVVSWALPGESLKAAALNLK 3596
WD40-rpts (______________________WD 4_____________________)
 4 WD40-repeats found in QUERY=CmaCh17G012070 (Len=3596): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 42 3328-3371 4.42 297.32 0.00611 25.0% 48.43 WD 2: Seg 45 3383-3421 6.36 377.30 0.00051 30.0% 49.09 WD 3: Seg 53 3473-3511 2.87 233.32 0.04375 17.5% 13.88 WD 4: Seg 58 3534-3582 5.14 326.83 0.00245 30.0% 47.58Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3328-3371 YDQ-----DRLLSTHENLHEGNQIQCAGVSHDGRILVTGADDGLVWVWR WD 2 3383-3421 -LQ---------LEKAFSAHTAKITCLYVSQPYMLIASGSDDCTVIIWD WD 3 3473-3511 TSQ---------LPSDSIFSITSGTFSDWM-NTNWYATGHQSGAVKVWQ WD 4 3534-3582 NLENKVPEYRLILHKVLKFHKHPVTALHLTSDLKQLLSGDSSGHVVSWA WD40 Template TGE---------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |