Input parameters:

  Query = CmaCh11G011010 (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G011010, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELKERHVAAIEMVNSLRERLKEKRRSLLDTDVAGFARSQGKRPVYFGATDLVCCRTLQGHTGKVYSLDWSSERNRI 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSASKDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPNDRDGNLPVSRTLSGHKGYVS 160 
WD40-rpts      ____________)   (_________________WD 2________________)          (______________

Query      161 CCQYVPDDDNHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVSSVSISGSNTFISGSCDATARLWDTRVASRAVQ 240 
WD40-rpts      ___WD 3_________________)          (_______________WD 4_______________)    (____

Query      241 TFHGHDGDVNTVKFFPDGNRFGTGSDDGTCRLYDIRTGHVLQVYHQLHSDDTNPHVTSIAFSISGRLLFAGYKNGDCYVW 320 
WD40-rpts      _____________WD 5________________)           (_______________WD 6_______________

Query      321 DTLLAQMVLNLGTLHNSHEGPITCLGLSADGSALCTGSWDSNLKIWAFGGQRKVN 375 
WD40-rpts      )   (___________________WD 7__________________)        

7 WD40-repeats found in QUERY=CmaCh11G011010 (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    55-93      10.29  539.72  3.3e-06       45.0%     56.50
  WD 2:  Seg  8    97-135      8.96  484.80  1.8e-05       17.5%     54.95
  WD 3:  Seg 12   146-185      8.13  450.41  5.3e-05       40.0%     50.50
  WD 4:  Seg 17   196-231      8.05  446.99  5.9e-05       45.0%     44.10
  WD 5:  Seg 20   236-274     10.27  539.00  3.4e-06       40.0%     48.48
  WD 6:  Seg 25   286-321      8.05  447.16  5.8e-05       30.0%     46.91
  WD 7:  Seg 28   325-367      8.66  472.21  2.7e-05       30.0%     57.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -LVCCRTL----QGHTGKVYSLDWSS-ERNRIVSASKDGRLIVWN
   WD 2   97-135    -SQKTHAI----KLPCPWVMTCAFSP-SGQSVAGGGLDSVCSIFN
   WD 3  146-185    -LPVSRTL----SGHKGYVSCCQYVPDDDNHLITGSGDQTCVLWD
   WD 4  196-231    GGE---FQ----SGHTADVSSVSISG-SN-TFISGSCDATARLWD
   WD 5  236-274    -SRAVQTF----HGHDGDVNTVKFFP-DGNRFGTGSDDGTCRLYD
   WD 6  286-321    ----QLHS----DDTNPHVTSIAFSI-SGRLLFAGYKNGDCYVWD
   WD 7  325-367    -AQMVLNLGTLHNSHEGPITCLGLSA-DGSALCTGSWDSNLKIWA

   WD40 Template    TGECLRTL----SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD