Input parameters:

  Query = thoc6_iso1_Hsapiens (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (thoc6_iso1_Hsapiens, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERAVPLAVPLGQTEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVY 80  
WD40-rpts                   (_________________WD 1________________)             (______________

Query       81 SMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTF 160 
WD40-rpts      __WD 2________________)            (_________________WD 3________________)   (__

Query      161 TRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA 240 
WD40-rpts      _______________WD 4________________)          (_________________WD 5____________

Query      241 LTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAA 320 
WD40-rpts      ____)  (________________WD 6_______________)  (___________________WD 7__________

Query      321 GNSCRVDVFTNLGYRAFSLSF 341 
WD40-rpts      _________)           

7 WD40-repeats found in QUERY=thoc6_iso1_Hsapiens (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-52       9.14  492.33  1.4e-05       30.0%     53.41
  WD 2:  Seg  5    66-103      6.59  387.00  0.00038       22.5%     51.69
  WD 3:  Seg 10   116-154      8.10  449.42  5.5e-05       12.5%     46.32
  WD 4:  Seg 13   158-196     10.17  534.92  3.8e-06       32.5%     56.07
  WD 5:  Seg 18   207-245      6.10  366.63  0.00071       15.0%     45.76
  WD 6:  Seg 22   248-284      5.02  321.84  0.00286       15.0%     53.66
  WD 7:  Seg 26   287-330      7.74  434.38  8.7e-05       25.0%     58.38

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-52     -TEVFQALQRLHMTIFSQSV-----SPCGKFLAAGNNYGQIAIFS
   WD 2   66-103    -KKPVVTFQAHDGPVYSM-V-----STDRHLLSAGDGEVKAWLWA
   WD 3  116-154    -RQPPYRTSLEVPEINALLL-----VPKENSLILAGGDCQLHTMD
   WD 4  158-196    -GTFTRVLRGHTDYIHCLAL-----RERSPEVLSGGEDGAVRLWD
   WD 5  207-245    EVYKHEECSRPHNGRWIGCL-----ATDSDWMVCGG-GPALTLWH
   WD 6  248-284    -SSTPTTIFPIRAPQKHVTF-----YQD--LILSAGQGRCVNQWQ
   WD 7  287-330    -GELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAAGNSCRVDVFT

   WD40 Template    TGECLRTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD