Input parameters:

  Query = CmaCh04G000280 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G000280, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAAGGGGEGRSGISNALLLAYFDFQSRSLSHQPVAKYGTGSDLPYRMAVHPAGDGIICSLPKSCSLFKLDTKKDAGDNK 80  
WD40-rpts                                     (________________WD 1________________)           

Query       81 LGLKLSQEVLSQLADVGLQLALAFNNEGSLLATGGEDGNLRVFKWPSLDIILNEPSAHSSVKDLDFSYDGKYLVSLGGPC 160 
WD40-rpts           (_________________WD 2________________)   (________________WD 3____________

Query      161 RVWDVTSSSVVTSLTKENDEVFISCRFSMTIDGNMVLYTAAVTGRGGSIITWNATTWRRVASKLITRDNITAFNVSTNGK 240 
WD40-rpts      ___)   (____________________WD 4____________________)   (_________________WD 5__

Query      241 LLACGTAQGDVLVINSTSMRVQQIVKKAHLGFVTALSFSRDSRALASASMDSSARVTVIEEKQKKGMSLWVIIFILLIAI 320 
WD40-rpts      ______________)(___________________WD 6__________________)                      

Query      321 AAYFINAEILKLELPSFSHRK 341 
WD40-rpts                           

6 WD40-repeats found in QUERY=CmaCh04G000280 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    32-69       6.28  374.15  0.00056        5.0%     51.77
  WD 2:  Seg  7    86-124      8.25  455.34  4.5e-05       20.0%     57.37
  WD 3:  Seg 11   128-164      7.65  430.80  9.7e-05       35.0%     53.89
  WD 4:  Seg 15   168-213      6.24  372.22  0.00060       20.0%     53.76
  WD 5:  Seg 19   217-255      9.00  486.63  1.7e-05       20.0%     57.88
  WD 6:  Seg 23   256-298      8.52  466.47  3.2e-05       30.0%     54.63

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-69     -HQ---PVAKYGTGSDLPY---RMAVHPAGDGI----ICSL-PKSCSLFK
   WD 2   86-124    -SQ---EVLSQLADVGLQL---ALAFNNEGSLL----ATGGEDGNLRVFK
   WD 3  128-164    -LD---IILNEPSAHSSVK---DLDFSYDGKYL----VSL--GGPCRVWD
   WD 4  168-213    -SS---VVTSLTKENDEVFISCRFSMTIDGNMVLYTAAVTGRGGSIITWN
   WD 5  217-255    -WR---RVASKLITRDNIT---AFNVSTNGKLL----ACGTAQGDVLVIN
   WD 6  256-298    STSMRVQQIVKKAHLGFVT---ALSFSRDSRAL----ASASMDSSARVTV

   WD40 Template    TGE---CLRTLSGHTSGVT---SVSFSPDGKRL----VSGSEDGTIKVWD