WDRR: WD40 Repeat Recognition
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| JobID: M6F5V1659502168 Submitted: 2022-08-03 12:49:28 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749523 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G009890 (Len=901) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G009890, Len=901): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTLMYLHLFLAQKLLDTLAFFFSNSSSAVTLMKKVNLGLFPYLFLIQFSSNCPSGFGSSSAFDIFHTPLLIIPMSKAGTL 80
WD40-rpts
Query 81 DLASGLGGKLDKNEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKR 160
WD40-rpts
Query 161 HEHFLALQLDLKPGHKVLDVGCGIGGPLREIARFSYTSVTGLNNNEYQISRGKELNRVAKVDKTCDFVKADFMKMPFPDN 240
WD40-rpts
Query 241 SFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQHFAAYEWCMTDAFDSNNQEHQKIKAEIEIGDGLPDIRLTGQCLGALKQ 320
WD40-rpts
Query 321 AGFEVVWERDLAVNSPLPWYLPLDKSHFSLSSFRLTAIGRFITKNMVKVLEFVRLAPKGSQRVQDFLEKAAEGLVEGGKK 400
WD40-rpts (_
Query 401 EIFTPMYFFLARKPLSASENKARMATEMDVEQRETINNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKL 480
WD40-rpts ___________________________________WD 1___________________________________)
Query 481 PYAFYISDQELLVSLGAYLEKNKVSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPDGRQLASGSGDTTV 560
WD40-rpts (________________WD 2________________)(_________________WD 3______________
Query 561 RLWDLNTQTPLFTCTGHKNWVLSIAWSPDGKHLVSGSKAGELFCWDPQTGKPLGNPLTGHKKWITGVSWEPLHLSAPCRR 640
WD40-rpts ___) (_________________WD 4________________) (___________________WD 5_____
Query 641 FVSSSKDGDARIWDVSLKKCVICLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTE 720
WD40-rpts _____________) (________________WD 6________________) (________________WD 7_
Query 721 YVLRTGAFDHTGKQFSSPEEMKKVALERYNKMKGNAPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQLVNHVYFSPDG 800
WD40-rpts _______________) (______________WD 8______________)(___________________WD 9___
Query 801 QWVASASFDKSVKLWNGITGKFVAAFRGHVAPVYQISWSADSRLLLSGSKDSTLKIWDIRTRKLKEDLPGHADEVFAVDW 880
WD40-rpts _______________) (_________________WD10________________) (_________________W
Query 881 SPDGEKVASGGKDKVLKLWMG 901
WD40-rpts D11________________)
 11 WD40-repeats found in QUERY=CmaCh14G009890 (Len=901): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 399-475 2.87 233.33 0.04374 12.5% 17.30 WD 2: Seg 15 487-524 4.84 314.60 0.00358 7.5% 35.73 WD 3: Seg 19 525-564 12.93 648.92 1.1e-07 55.0% 55.38 WD 4: Seg 23 568-606 10.58 551.79 2.3e-06 47.5% 55.34 WD 5: Seg 27 612-654 8.23 454.68 4.6e-05 37.5% 48.70 WD 6: Seg 30 658-695 9.23 495.75 1.3e-05 45.0% 54.20 WD 7: Seg 34 699-736 7.82 437.82 7.8e-05 32.5% 53.19 WD 8: Seg 38 740-773 5.82 355.26 0.00101 25.0% 43.91 WD 9: Seg 42 774-816 9.34 500.64 1.1e-05 35.0% 54.07 WD10: Seg 46 820-858 10.58 551.61 2.3e-06 40.0% 57.68 WD11: Seg 50 862-900 10.17 534.80 3.8e-06 35.0% 52.70Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 399-475 -K---KEIFTPMYFFLARKPLSASENKARMATEMDVEQRETINNVMILLTDP-----EGTPLGAPMYLPQNAGPQQLQQMVNKLLS WD 2 487-524 SD---Q--ELL-----------V----------------SLGAYLEKNKVSV-----EKVLTVVYQPQAVFRI-----------RP WD 3 525-564 VS---RCSATI-----------S----------------GHAEAVLSVSFSP-----DGRQLASGSGDTTVRL-----------WD WD 4 568-606 -Q---TPLFTC-----------T----------------GHKNWVLSIAWSP-----DGKHLVSGSKAGELFC-----------WD WD 5 612-654 -----PLGNPL-----------T----------------GHKKWITGVSWEPLHLSAPCRRFVSSSKDGDARI-----------WD WD 6 658-695 -K---KCVICL-----------S----------------GHTLAITCVKWGG-----DG-VIYTGSQDCTIKV-----------WE WD 7 699-736 -G---KLIREL-----------K----------------GHGHWVNSLALST-----EY-VLRTGAFDHTGKQ-----------FS WD 8 740-773 -E---MKKVAL-----------E----------------RY-----NKMKGN-----APERLVSGSDDFTMFL-----------WE WD 9 774-816 PAVSKHPKTRM-----------T----------------GHQQLVNHVYFSP-----DGQWVASASFDKSVKL-----------WN WD10 820-858 -G---KFVAAF-----------R----------------GHVAPVYQISWSA-----DSRLLLSGSKDSTLKI-----------WD WD11 862-900 -R---KLKEDL-----------P----------------GHADEVFAVDWSP-----DGEKVASGGKDKVLKL-----------WM WD40 Template TG---ECLRTL-----------S----------------GHTSGVTSVSFSP-----DGKRLVSGSEDGTIKV-----------WD |
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