Input parameters:

  Query = CmaCh14G006210 (Len=302)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G006210, Len=302):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAQKIETGHQDMVHDVQMDYFGKRIATASSDFTIKIISVSKNSASQLLATLNGHRGPVWQVAWAHPKFGSMIASSSYDG 80  
WD40-rpts      (_________________WD 1________________)      (__________________WD 2____________

Query       81 QVIIWKEGNQNQWLQAHVFNAHKSSVNSIAWAPHELGLCLACGSSDGDISVFIARSDGGWDSNQIEQAHPVGVTSVSWGP 160 
WD40-rpts      _____)(_____________________WD 3____________________) (_________________________

Query      161 TTAPGSLVGSGSVDPVWKLASGGFDSTVKVWTLKDGSWRRDSSPALQMHTDWVRDVAWSPNLGLQKSTIASGSQDGTVII 240 
WD40-rpts      _WD 4__________________________)     (____________________WD 5__________________

Query      241 WSVTKDGGKWEGTVMNDFKTPIWKVSWSLTGDLLAVADGNNHFTLWKEAVDGKWQQVTTVEP 302 
WD40-rpts      _)(____________________WD 6___________________)               

6 WD40-repeats found in QUERY=CmaCh14G006210 (Len=302):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       9.17  493.54  1.4e-05       30.0%     52.27
  WD 2:  Seg  5    46-86       8.36  459.93  3.9e-05       32.5%     56.59
  WD 3:  Seg  9    87-133      7.95  443.13  6.6e-05       35.0%     55.74
  WD 4:  Seg 13   135-192      7.41  420.94  0.00013       40.0%     51.42
  WD 5:  Seg 17   198-242      8.21  453.87  4.8e-05       35.0%     42.99
  WD 6:  Seg 20   243-287      7.75  435.00  8.5e-05       15.0%     55.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M----S-----AQKIETGHQDMVHDVQMDYF----GK--------------RIATASSDFTIKIIS
   WD 2   46-86     -S----Q-----LLATLNGHRGPVWQVAWAHP--KFGS--------------MIASSSYDGQVIIWK
   WD 3   87-133    EG----NQNQWLQAHVFNAHKSSVNSIAWAPH--ELGL--------------CLACGSSDGDISVFI
   WD 4  135-192    RSDGGWD-----SNQIEQAHPVGVTSVSWGPT----TAPGSLVGSGSVDPVWKLASGGFDSTVKVWT
   WD 5  198-242    WR---RD-----SSPALQMHTDWVRDVAWSPNLGLQKS--------------TIASGSQDGTVIIWS
   WD 6  243-287    VT----KDGGKWEGTVMNDFKTPIWKVSWSLT----GD--------------LLAVADGNNHFTLWK

   WD40 Template    TG----E-----CLRTLSGHTSGVTSVSFSPD----GK--------------RLVSGSEDGTIKVWD