WDRR: WD40 Repeat Recognition
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| JobID: M2TG51506647980 Submitted: 2017-09-29 09:19:40 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 232603584 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = NP_000073 (Len=396) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (NP_000073, Len=396): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80
WD40-rpts (____________WD 1___________) (_________________WD 2_________________)
Query 81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160
WD40-rpts (_________________WD 3_________________)(___________________WD 4________
Query 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
WD40-rpts ___________) (_________________WD 5_________________) (_____
Query 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320
WD40-rpts ____________WD 6________________) (___________________WD 7___________________)
Query 321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG 396
WD40-rpts (_________________WD 8________________)
 8 WD40-repeats found in QUERY=NP_000073 (Len=396): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-29 3.95 277.75 0.01120 12.5% 35.82 WD 2: Seg 4 33-72 8.16 451.56 5.1e-05 25.0% 52.77 WD 3: Seg 9 89-128 7.67 431.65 9.5e-05 32.5% 38.69 WD 4: Seg 12 129-172 6.03 363.65 0.00078 17.5% 50.98 WD 5: Seg 16 176-215 8.89 482.08 2.0e-05 37.5% 54.96 WD 6: Seg 21 235-273 8.66 472.46 2.7e-05 20.0% 44.08 WD 7: Seg 24 277-320 6.54 384.79 0.00041 20.0% 51.59 WD 8: Seg 28 324-362 9.56 509.57 8.4e-06 35.0% 57.08Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-29 ------------M-----LGFLSARQTG-LEDP---LRLRRAESTRRVLG WD 2 33-72 -NKD-RDVERIHG-----GGINTLDIEPVEGRY---MLSGGSDGVIVLYD WD 3 89-128 -SIG-RDHPDVHR-----YSVETVQWYPHDTGM---FTSSSFDKTLKVWD WD 4 129-172 TNTLQTADVFNFE-----ETVYSHHMSP-VSTKHCLVAVGTRGPKVQLCD WD 5 176-215 -GSC-SHILQGHR-----QEILAVSWSP-RYDY--ILATASADSRVKLWD WD 6 235-273 -QAV-ESANTAHN-----GKVNGLCFTS-DGLH---LLTVGTDNRMRLWN WD 7 277-320 -GEN-TLVNYGKVCNNSKKGLKFTVSCG-CSSE---FVFVPYGSTIAVYT WD 8 324-362 -GEQ-ITMLKGHY-----KTVDCCVFQS-NFQE---LYSGSRDCNILAWV WD40 Template TGEC-LRTLSGHT-----SGVTSVSFSP-DGKR---LVSGSEDGTIKVWD |
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