Input parameters:

  Query = CsaV3_3G044790 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G044790, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAHSDPNISSTLTEEDFAMRNSSASVGGQAFYDQSRMSGEGSPMTMSPWNQTSMFAKSPWSQVEENSGPQNGLIGSLVRE 80  
WD40-rpts                        (_________________WD 1________________)             (_________

Query       81 EGHIYSLAASGELLYTGSDSKNIRVWKNLKEYAAFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVSQKNPSDHKRAGTL 160 
WD40-rpts      _______WD 2_______________)(________________WD 3________________)(______________

Query      161 PTLKDIFKSSINPNNYVEGRGRRRALWIKHSDAVSCLSLTEDKLLLYSASWDRTLKVWRIADSKCLESLNVHDDAVNSVV 240 
WD40-rpts      WD 4______________)(_________________WD 5_________________)   (________________W

Query      241 ASVEGLVFTGSADGTVKVWKREAKGKATKHTLLESLLKQECAVTALAVTAAGTVVYCGSSDGMVNFWERKGKLTHGGVLK 320 
WD40-rpts      D 6________________)         (_________________WD 7________________)(___________

Query      321 GHKLTVLCLVAVGSMVFSGSADKTICVWRREGAVHTCLSVLTGHTGPVKCLAAEEDNESSKNGDRQWIVYSGSLDKSIKV 400 
WD40-rpts      _______WD 8_________________)     (_____________________WD 9____________________

Query      401 WRVSEMAADRNAVAMMQQQFMNDSDSMPSDRSFSSSNRAISISKQP 446 
WD40-rpts      _)   (__________________WD10_________________)

10 WD40-repeats found in QUERY=CsaV3_3G044790 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    19-57       4.35  294.33  0.00671       10.0%     34.89
  WD 2:  Seg  5    71-107      6.72  392.11  0.00032       22.5%     49.82
  WD 3:  Seg  9   108-145      8.55  467.91  3.1e-05       22.5%     52.22
  WD 4:  Seg 13   146-179      3.31  251.40  0.02519       12.5%     18.50
  WD 5:  Seg 15   180-219     10.86  563.08  1.6e-06       32.5%     56.36
  WD 6:  Seg 19   223-260      8.87  481.19  2.0e-05       42.5%     53.03
  WD 7:  Seg 22   270-308      8.27  456.10  4.4e-05       25.0%     49.13
  WD 8:  Seg 26   309-349      6.58  386.29  0.00039       35.0%     46.95
  WD 9:  Seg 30   355-402      7.83  438.27  7.7e-05       40.0%     51.26
  WD10:  Seg 34   406-446      4.98  320.52  0.00298       10.0%     18.81

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-57     MRNSS---ASV-GGQAF--YDQSRMSGEGSP---------MTMSPWNQTSMFAK
   WD 2   71-107    -NGLI---GSLVREEGH--IYS--LAASGEL---------LYTGSDSKNIRVWK
   WD 3  108-145    NLKEY---AAFKSSSGL--VKAIIIS--GEK---------IFTGHQDGKIRVWK
   WD 4  146-179    ---------VSQKNPSD--HKRAGTLPTLKD---------IFKSSINPNNYVEG
   WD 5  180-219    RGRRR---ALWIKHSDA--VSCLSLTEDKLL---------LYSASWDRTLKVWR
   WD 6  223-260    -SKCL---ESLNVHDDA--VNSVVASVEG-L---------VFTGSADGTVKVWK
   WD 7  270-308    -HTLL---ESLLKQECA--VTALAVTAAGTV---------VYCGSSDGMVNFWE
   WD 8  309-349    RKGKLTHGGVLKGHKLT--V--LCLVAVGSM---------VFSGSADKTICVWR
   WD 9  355-402    -HTCL---SVLTGHTGP--VKCLAAEEDNESSKNGDRQWIVYSGSLDKSIKVWR
   WD10  406-446    -MAAD---RNAVAMMQQQFMNDSDSMPSDRS---------FSSSNRAISISKQP

   WD40 Template    TGECL---RTLSGHTSG--VTSVSFSPDGKR---------LVSGSEDGTIKVWD