Input parameters:

  Query = CmaCh11G000580 (Len=883)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G000580, Len=883):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGVTSSMAAKFAFFPPNPPSYKLLKDQPTGLLLLDPFPHRENVDVWKLPTRKGTEIVAVYIRYPMATSTLLYSHGNAAD 80  
WD40-rpts                                                                                      

Query       81 VGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAAHL 160 
WD40-rpts                                                                                      

Query      161 PRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLGTSDDVVDFSHGKHLWELCQEKYEPLWLKGGNHCD 240 
WD40-rpts                                                                                      

Query      241 LELFPEYIRHLKKFVSTVERSLSRRNGSRKSTDRIEQSRRSTDCFEAPRRSSDRREKPRKSVDRLDKSRPQGYKFDNIEK 320 
WD40-rpts                                                                                      

Query      321 LEKLKISIDQVERSRRSVEYYEKPRRSIDQQFERGRKSVDWLDRMRAGGQSTMIMSPNEIANNAIRHALRALRQRHLVEE 400 
WD40-rpts                                                                                      

Query      401 GAHAPAFLALSRPIISQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIDNLQQELTRARDE 480 
WD40-rpts                                                                                      

Query      481 CSQLKADLEMKIKAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEANALYEDMIDRLKASGL 560 
WD40-rpts                                                                                      

Query      561 EKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSGKLISGGQDRTVKVWDTNTGSLSSTLHGC 640 
WD40-rpts                                  (_________________WD 1________________)   (_________

Query      641 LGSVLDLAVTHDNRSVIAASSSNNLYVWDVGSGRVRHTLTGHSDKVCAVDVSKISSRHVVSAAYDRTIKIWDLQKGYCTK 720 
WD40-rpts      ________WD 2________________)   (_________________WD 3_________________)   (____

Query      721 TLIFPSNCNAVRFSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLE 800 
WD40-rpts      ____________WD 4________________)   (_________________WD 5________________)   (_

Query      801 VCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIF 880 
WD40-rpts      __________________WD 6__________________)   (_________________WD 7______________

Query      881 TWN 883 
WD40-rpts      __)

7 WD40-repeats found in QUERY=CmaCh11G000580 (Len=883):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   589-627     10.47  547.00  2.6e-06       32.5%     51.98
  WD 2:  Seg 21   631-669      9.91  524.22  5.3e-06       25.0%     56.67
  WD 3:  Seg 25   673-712      9.30  498.84  1.2e-05       40.0%     56.78
  WD 4:  Seg 29   716-753      8.97  485.26  1.8e-05       40.0%     56.52
  WD 5:  Seg 33   757-795      9.89  523.05  5.5e-06       30.0%     55.85
  WD 6:  Seg 37   799-841      8.34  459.26  4.0e-05       35.0%     54.41
  WD 7:  Seg 41   845-883      9.77  518.27  6.4e-06       35.0%     49.45

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  589-627    SVCKHSIRAHEGGCGT----ILFEN-NSGKLISGGQDRTVKVWD
   WD 2  631-669    GSLSSTLHGCLGSVLD----LAVTH-DNRSVIAASSSNNLYVWD
   WD 3  673-712    GRVRHTLTGHSDKVCA----VDVSKISSRHVVSAAYDRTIKIWD
   WD 4  716-753    GYCTKTLIFP-SNCNA----VRFSM-DGQTICSGHMDGNLRLWD
   WD 5  757-795    GKLLSEVAGHSLAVTS----LSLSR-NGNTILTSGRDNLHNLFD
   WD 6  799-841    LEVCGTLRASGNRVASNWSRSCISP-DDNHVAAGSADGSVHVWS
   WD 7  845-883    HDIVSTLKEHTASVLC----CSWSG-LGKPLASADRNGIIFTWN

   WD40 Template    GECLRTLSGHTSGVTS----VSFSP-DGKRLVSGSEDGTIKVWD