WDRR: WD40 Repeat Recognition
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| JobID: LUNXH1358738900 Submitted: 2013-01-21 11:28:20 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 380512067 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = tr_B6JV84_B6JV84_SCHJY (Len=630) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (tr_B6JV84_B6JV84_SCHJY, Len=630): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSNNAGMQKVHDLLDAIKTEYDTLSQQASVLKNRKIDYESSVITSQIQEMQQIQHSLSELETQHKKMKESYEEEIASLKK 80
WD40-rpts
Query 81 KLESKNNETAGLSAADQHLFGNDSTGQATRPQLQAQPYKPVLSQPGTAAFQASTQKQPVPYTAIDGSSAIQSIPTVQPLN 160
WD40-rpts
Query 161 HPQGVDSLGNPQPGQGTVPGAATFSSGGAFQQDPSAATAAANLPPGGPMTQPVGPGAATVAQGAFYNNNANTNPSSNNNV 240
WD40-rpts (___
Query 241 ITKLEQTPSTPAEVPAPSAHVAAVGNPVPPSNAADVNPQQQQRQPSPAASAPIDRRMSLDERTKESGQDWYAVYNEKMPK 320
WD40-rpts ______________WD 1________________) (_________________WD 2________________)(__
Query 321 RMSIGLVHTLEHKSVVCCVRFSADGKYLATGCNRAAEIFDVQTGQKLATFEQENTNPETDLYIRSVAFSPDGKYLVTGAE 400
WD40-rpts _________________WD 3__________________) (____________________WD 4____________
Query 401 DRQIRMWDIATGKVKHVFVGHEQDIYSLDYSRDGRYIVSGSGDHTARLWEAETGKCVLTLAIENGVTAVAFSPNNQFIAA 480
WD40-rpts _______) (_________________WD 5________________) (________________WD 6______
Query 481 GSLDQVIRVWSITGTLLKKLEGHRESVYSIAFSADGKYLASGSLDKTMRLWELKLDENAKTCSKASAISTYTGHSNFVLS 560
WD40-rpts __________) (_________________WD 7________________) (_______________
Query 561 VAISPNGKWAVSGSKDRSVQFWNLKTDELYLTFQGHKNSVISVCFSPDGKLFATGSGDLRARIWSIEDTA 630
WD40-rpts __WD 8________________) (_________________WD 9________________)
 9 WD40-repeats found in QUERY=tr_B6JV84_B6JV84_SCHJY (Len=630): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 237-275 7.33 417.25 0.00015 12.5% 47.96 WD 2: Seg 7 279-317 7.20 412.07 0.00017 17.5% 29.47 WD 3: Seg 10 318-360 6.55 385.43 0.00040 32.5% 53.48 WD 4: Seg 14 364-408 8.97 485.37 1.8e-05 47.5% 57.83 WD 5: Seg 18 412-450 9.96 525.95 5.1e-06 35.0% 56.49 WD 6: Seg 22 454-491 8.65 472.09 2.7e-05 42.5% 56.43 WD 7: Seg 26 494-532 10.63 553.58 2.1e-06 47.5% 52.31 WD 8: Seg 30 545-583 9.60 511.20 8.0e-06 40.0% 54.91 WD 9: Seg 34 587-625 9.99 527.37 4.8e-06 42.5% 57.55Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 237-275 -NNN----VITKLEQTPS------TPAEVPAPSAHVAAVGNPVPPSNAAD WD 2 279-317 -QQQ----QRQPSPAASA------PIDRRMSLDERTKESGQDWYAVYNEK WD 3 318-360 MPKRMSIGLVHTLEHKSV------VCCVRFSADGKYLATGC-NRAAEIFD WD 4 364-408 -GQK----LATFEQENTNPETDLYIRSVAFSPDGKYLVTGAEDRQIRMWD WD 5 412-450 -GKV----KHVFVGHEQD------IYSLDYSRDGRYIVSGSGDHTARLWE WD 6 454-491 -GKC----VLTL-AIENG------VTAVAFSPNNQFIAAGSLDQVIRVWS WD 7 494-532 -GTL----LKKLEGHRES------VYSIAFSADGKYLASGSLDKTMRLWE WD 8 545-583 -ASA----ISTYTGHSNF------VLSVAISPNGKWAVSGSKDRSVQFWN WD 9 587-625 -DEL----YLTFQGHKNS------VISVCFSPDGKLFATGSGDLRARIWS WD40 Template TGEC----LRTLSGHTSG------VTSVSFSPDGKRLVSGSEDGTIKVWD |
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