Input parameters:

  Query = CmaCh19G007570 (Len=483)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh19G007570, Len=483):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKRARFDDSSKAVVNFLKREVGEISTRNFANRLGALEDLVLRLGLLRKLERHKGCVNTVSFNAAGDVLVSGSDDRRVIL 80  
WD40-rpts                                          (____________________WD 1___________________

Query       81 WNWEAGQVEISFQSGHNNNVFQAKFMPYTDDRSIVTCAADGQVRHAQVLNGGRVETSLLGSHQGRAHKLAIEPGSPYIFY 160 
WD40-rpts      _)(____________________WD 2___________________)(____________________WD 3________

Query      161 TCGEDGLVQRFDLRTGAAVELFTCQSVGNRAGYMSTVQLNAIAMDPRNPNLVVVAGSDEYARLYDIRKCGGEGSTSTDSG 240 
WD40-rpts      ___________)              (_________________WD 4________________)(______________

Query      241 KPADCYCPPHLIADEQVGITGLAFSELSELLVSYNDEYIYLFNRDMGLGPNPNAVSPVSLSSDTSEMGAEKVVNCTPQVY 320 
WD40-rpts      ____________WD 5__________________________)(___________WD 6__________)   (______

Query      321 KGHRNCETVKGVNFFGPKCEYVISGSDCGRIFIWRKKGGELIRVMKADEDVVNCIEPHPHMTMLASSGIESDVKIWTPNS 400 
WD40-rpts      ____________WD 7__________________)   (_________________WD 8________________)   

Query      401 RHRATLPEKIEQNPKPRGWMHRLALPEEVMMQLFSLRRRRNSNPVRGRENSTPNRDILELIMTFSNSNSDGSSDYNAGDA 480 
WD40-rpts         (_____________WD 9_____________)                                             

Query      481 AED 483 
WD40-rpts         

9 WD40-repeats found in QUERY=CmaCh19G007570 (Len=483):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    37-82       9.25  496.78  1.3e-05       40.0%     53.77
  WD 2:  Seg  7    83-127      6.92  400.37  0.00025       25.0%     54.48
  WD 3:  Seg 11   128-172      6.57  386.00  0.00039       20.0%     48.50
  WD 4:  Seg 16   187-225      6.07  365.21  0.00074       17.5%     43.32
  WD 5:  Seg 19   226-283      5.50  341.77  0.00154       25.0%     42.78
  WD 6:  Seg 22   284-310      2.86  232.75  0.04451       12.5%     -2.69
  WD 7:  Seg 23   314-355      6.57  386.09  0.00039       27.5%     51.21
  WD 8:  Seg 27   359-397      9.02  487.29  1.7e-05       22.5%     56.23
  WD 9:  Seg 31   404-435      3.40  255.02  0.02255        2.5%     27.95

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-82     LEDLVLRLGL-------------------LR----KLERHKGCVNTVS---FNA--AGDVL-VSGSDDRRVILWN
   WD 2   83-127    WEA---GQVE-------------------IS----FQSGHNNNVFQAK---FMPYTDDRSI-VTCAADGQVRHAQ
   WD 3  128-172    VLN------G-------------------GRVETSLLGSHQGRAHKLA---IEP--GSPYIFYTCGEDGLVQRFD
   WD 4  187-225    VGN---------------------------R----AGYMSTVQLNAIA---MDP-RNPNLV-VVAGSDEYARLYD
   WD 5  226-283    IRK------CGGEGSTSTDSGKPADCYCPPH----LIADEQVGITGLA---FSE--LSELL-VSYN-DEYIYLFN
   WD 6  284-310    ------------------------------------------RDMGLG---PNP--NAVSP-VSLSSDTSEMGAE
   WD 7  314-355    -NC------T-------------------PQ----VYKGHRNCETVKGVNFFGP--KCEYV-ISGSDCGRIFIWR
   WD 8  359-397    -GE------L-------------------IR----VMKADEDVVNCIE---PHP--HMTML-ASSGIESDVKIWT
   WD 9  404-435    -----------------------------AT----LPEKIEQNP-------KPR--GWMHR-LALPEEVMMQLFS

   WD40 Template    TGE------C-------------------LR----TLSGHTSGVTSVS---FSP--DGKRL-VSGSEDGTIKVWD