Input parameters:

  Query = CsaV3_1G040460 (Len=518)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G040460, Len=518):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSSQPQQQQQQQPPPQQQQPPPPPQQQTPVVKKKETRGRKPKPKDEKKDEQLTKKMKAQQQPSVDERYTQWKSLVPVLY 80  
WD40-rpts                                                                                      

Query       81 DWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYK 160 
WD40-rpts                                                           (__________________________

Query      161 TIIHPGEVNRIRELPQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGG 240 
WD40-rpts      __WD 1___________________________)               (_________________WD 2_________

Query      241 KDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVG 320 
WD40-rpts      ________)(________________WD 3_______________)   (_________________WD 4_________

Query      321 DDSCLILWDARTGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCV 400 
WD40-rpts      ________)     (_________________WD 5_________________)         (________________

Query      401 QWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNAADPWTVVSVSDDCDTTGG 480 
WD40-rpts      _WD 6_________________)                  (_____________________WD 7_____________

Query      481 GGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIECAAKP 518 
WD40-rpts      _______)                              

7 WD40-repeats found in QUERY=CsaV3_1G040460 (Len=518):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   134-194      5.24  330.93  0.00216       15.0%     52.93
  WD 2:  Seg  8   210-249      6.68  390.68  0.00034       20.0%     51.20
  WD 3:  Seg 12   250-286      6.33  376.26  0.00053        7.5%     22.55
  WD 4:  Seg 16   290-329      7.72  433.42  9.0e-05       25.0%     54.25
  WD 5:  Seg 20   335-374      7.87  439.67  7.4e-05       22.5%     53.41
  WD 6:  Seg 24   384-423      8.27  456.16  4.4e-05       35.0%     54.48
  WD 7:  Seg 28   442-488      4.92  317.98  0.00322       27.5%     53.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  134-194    VKPRVAAAEHISQFNEEARSPFVKKYKTIIHP-GEVNRIRELP-QNSR-IVATHTDS-------PDVLIWD
   WD 2  210-249    -SR--------------------PDLILTGHQENAEFALAMCP-TEPY-V-LSGGKD-------KLVVLWS
   WD 3  250-286    -----------------------IQDHITTSA-TDAGASKSPG-SGGS-I-IKKPGE-------ANDKASD
   WD 4  290-329    -IG--------------------PRGVYHGHE-DTVEDVTFCPSNAQE-F-CSVGDD-------SCLILWD
   WD 5  335-374    -SP--------------------AVKVEKAHN-ADLHCVDWNPHDDNL-I-ITGSAD-------NSIRLFD
   WD 6  384-423    -GS--------------------PIYKFEGHK-AAVLCVQWSP-DKSSVF-GSSAED-------GLLNIWD
   WD 7  442-488    -PG--------------------LFFQHAGHR-DKVVDFHWNAADPWT-V-VSVSDDCDTTGGGGTLQIWR

   WD40 Template    TGE--------------------CLRTLSGHT-SGVTSVSFSP-DGKR-L-VSGSED-------GTIKVWD