WDRR: WD40 Repeat Recognition
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| JobID: LP2041659515974 Submitted: 2022-08-03 16:39:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734591 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G048070 (Len=3189) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G048070, Len=3189): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNIVKGVADLIRRTSSGPIGVSVSGSQANWSHSPGQKIRFGEVGDEAILNELWVRCEQAADKGERKRLFYVFLRQFIVAY 80
WD40-rpts
Query 81 KNWKPINSGWLSEDALPSVENLSTSDYTVGCSSGHPAEIILKLSEEVKQLTSLIVEWRSTADLLGASIGLNLTSEGFLVL 160
WD40-rpts
Query 161 DALEIVMRSMHNCKVFGYYSGIQKLTALMKGAVIQLKTIAGELSVDEGVSNIVVENTKLLQKMLKYVVSIIHIFIDIDSL 240
WD40-rpts
Query 241 FYVEDHSLSMKVPTCEERLMWRQKAVVLVMEAGGINWLVELLRVTRRLNIKEQNIEVELQFLALKILYSALSENPRGQNH 320
WD40-rpts
Query 321 FKSIGGLEVLLDGLGLPSKIVLAPKDPAGADKKRDESRFLNILQLHVLSLAVLREAVFGNLNNMQFLCENGRVHKFANSF 400
WD40-rpts
Query 401 CSPAFMLQEYKLQIGELSGQHDFRWPIFDCKYNVAAHSGECSVVPLTDLTHVQSWNKYVVKLCKVLCSFLLAPEDVKPHH 480
WD40-rpts
Query 481 PQASSIRIMTPVSLVYGDLSIKWVMRVLVAVFPCIRACSNQNDLPVHLRVLANALQHSVLTAFRKFLVSSPASLEIFREE 560
WD40-rpts
Query 561 GIWDLFFSENFFYFGHASEDFSLECCTNNDDDSSEKPETYYATSSNSPLKVEGVDIIQIEVISFVEFASTTCGSAHNLPE 640
WD40-rpts
Query 641 LSALLDTLEQSACNPEVVIALSKSLLHILQISSERTVASFKTLNGVPRLLKVACVQAQEHRRYENVISSEINYVGDIQSQ 720
WD40-rpts
Query 721 TNQGHDSRETGQSYLSCLETIMEIKPISEEDQKAKLYICTKYLEMFAQIKEREKSSTELSIDLLVGIREMLLNDPQYYQT 800
WD40-rpts
Query 801 LFRDGECFLHIVSLLNGNVDEANGEKLILNVLQTLTCLLAKNEVSKASFRALAGKGYQTMQTLLLDFCQCHPSDALLSAL 880
WD40-rpts
Query 881 LDMLVDGNFDLKLCPIIQNEDVIILYLSVLQKSSDSLKHQGLNMFQHLLRDSISNRASCVRAGMLTFLLDWFGQDNNDDL 960
WD40-rpts
Query 961 IVKIAQLIHVIGGHSVSGKDIRKIFALLRSEKVGKQKRYCSLLMASILSMLTEKGPTAFFDLSGNNSGILIKTPVQWPIN 1040
WD40-rpts
Query 1041 KGFSFSCWLRVENFPIHGTMGLFSFLTENGRGCVALLAKNKLIYESINLRRQTARLHVNIVRKKWHFLCITHSIGRAFSG 1120
WD40-rpts
Query 1121 GSLLKCYVDGDLVSSERCRYAKLYEPLTNCTVGAKFNVSLSEEVDTKESVEAAFPFLGQIGPVYLFNDALSSEQVQGIHS 1200
WD40-rpts
Query 1201 LGPSYMYSFLDNDIATFSENQLPRGILNAKESLASKIIFGLNAQASSGKSLFNVSPTLDLISEKNSFEATAMGGTELCSR 1280
WD40-rpts
Query 1281 RLLQRIIYCVGGVTVLFPLISQSDRYESESSGQFGQNVDVIDTKECLTAEVIELIASVLDENLPNQHQMHLLSGFSILGF 1360
WD40-rpts
Query 1361 LLQSVNPQQLNMETLAALKHLFSVISNCGFSELLIQDAISSIFLNLSIWIYSAYEVQRELYLFLIQQFDNDPRLLKNLCR 1440
WD40-rpts
Query 1441 LPLILDMICKFYCDKDKCKFGSGSKTSLHPPVGVLGERPTKDEIRKIRLLLLSLGEMSIRQNIVAADIKALIAFFERNQD 1520
WD40-rpts
Query 1521 VTCIEDVLHMVIRAIAQKTVLASFHEQVSFIGGYPIFVNLLQREFEPIRLLSLQFLGRLLVGLPSEKKGLRFFNLPSGKA 1600
WD40-rpts
Query 1601 KSVQESHKKINLRMQPLFSAISDRLFRFPPTDNLCAALFDVLLGGASPKQVLQKQNQSDGQKNKSPGSHFAVPQSLVLIF 1680
WD40-rpts
Query 1681 RFLCSCEDISARLKIITDLLDLLDTNPSNIEAFMEYGWNAWLTASVKLGALQQYKVRSMDQVEDKINEQCMIRKLFSVVL 1760
WD40-rpts
Query 1761 LHCICSVKGGWQHLEETATFLLMQSEKGQVSFKYFLRDMYEDLIQMLVDLSSGENIFVTQPCRDNALYLLRLIDDMLIAE 1840
WD40-rpts
Query 1841 LDHQLPILATVFDVSLDSTELELYISALHDVLQGESDDWTARYSQHQMEVKDDKMDENWWHLYDKLWIVISEINGKGPNK 1920
WD40-rpts
Query 1921 TFPKSSTSGGPTLGQRARGLVESLNLPAAEMAAVVVSGGLGSALGGKPNRIVDKAMVLRSEKFPRIILRLVMLYICKSPL 2000
WD40-rpts
Query 2001 GKASRCAQQFISLLPSLVVADDEQNKNRLQLFIWSLLAVRSQYRMLNNDARIHVISHLIRETVSYCKSILANSLVSADDS 2080
WD40-rpts
Query 2081 SDTSVFLKETGYIHNLIQKERVSAAIADEANYMKTSKIDHEKQLHDLRIRMEDTFSNESNSQKVFEDEMQGSLTSILIAD 2160
WD40-rpts
Query 2161 DNRRAAFQLAYEEEQQNITEKWMHMFRALIDERGPWSANSSPNISSTHWKLDKTEDMWRRRPKLRKNYHFDEKLCHTPSN 2240
WD40-rpts
Query 2241 SPGADITNAENENKSSIVAHIPEQMKRFLLKGVRKITDEGNSEPIENDAEQCEPNASILKNSSDGQYPELSKDIGDWKDT 2320
WD40-rpts
Query 2321 VQDRKDTSLFSPVTGESEVLMSTPCIFVTPKRKLAGRLAVMKNVLHFFGEFLVEGTGGASTFKNFEVLKSSNLTKLNQRQ 2400
WD40-rpts
Query 2401 KSLKCPLYLQSDSRKSTAVDNMENDDGYLKRPLKNVRRHRRWDIGKIKGVHWTRYLLRYTAIEIFFSDSVAPVFFNFDSP 2480
WD40-rpts
Query 2481 KDAKDIGTLIVSSRNDYLFPKGSSRSQSGVISFVDRRVALEMAETARESWRRRDITNFEYLMILNTLSGRSYNDLTQYPV 2560
WD40-rpts
Query 2561 FPWVLADYSSEVLDFNKSSTFRDLSKPVGALDLKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLH 2640
WD40-rpts
Query 2641 RNLQGGKFDHADRLFQSIEGTYRNCLSNTSDVKELIPEFFYLPEFLCNSNHYHLGVKQDGEPIGDVVLPPWAKGSPEVFI 2720
WD40-rpts
Query 2721 SRNREALESEYVSSNLHHWIDLVFGYKQRGKPAVEAANVFYYLTYEGAVDLDTMEDDLQRSAIEDQIANFGQTPIQIFRK 2800
WD40-rpts
Query 2801 KHPRRGPPIPIAHPLYFAPGSINLTSIISCSTNPPLAILHISMLDTHIVLVSQGLVLTVKMWLTTQLQYGGNFTFSGSQE 2880
WD40-rpts
Query 2881 PFFGVGSDVLSPRKIGSPLAENLELGGQCFATMQTPVENFLVSCGNWDNSFHIISVADGRLLQSIRQHSDVVSCAAVTSD 2960
WD40-rpts (_________________WD 1
Query 2961 GSILATGSYDTTVMVWKVLRGRSTEKRVRSTQSESPRKDYVIAETPFHVLCGHDDIITCLYVSVELDIVISGSKDGTCIF 3040
WD40-rpts ________________) (________________________WD 2_______________________
Query 3041 HTLREGRYIRSLHHPSGCGLSKLVASRHGRVVFYADDDLSLHLYSINGKHLAASESNGRLNCVELSQCGEFLVCAGDHGQ 3120
WD40-rpts _) (_________________WD 3_________________)(_________________WD 4_____________
Query 3121 IVVRSMNSLEVISRYNGIGKVIVSLTVTAEECFLAGTKDGSLLVYSIENPQLRKTGLPRNTKSKPSAVG 3189
WD40-rpts ____) (________________WD 5________________)
 5 WD40-repeats found in QUERY=CsaV3_3G048070 (Len=3189): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 36 2939-2977 7.12 408.97 0.00019 32.5% 58.19 WD 2: Seg 41 2989-3042 4.79 312.32 0.00384 27.5% 53.65 WD 3: Seg 45 3046-3085 3.05 240.84 0.03480 17.5% 57.03 WD 4: Seg 49 3086-3125 4.26 290.65 0.00751 22.5% 55.88 WD 5: Seg 53 3129-3166 3.46 257.77 0.02072 20.0% 52.93Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2939-2977 -G--------------RLLQSIRQHSD-VVSCAAVTSDGSILATGSYDTTVMVWK WD 2 2989-3042 RSTQSESPRKDYVIAETPFHVLCGHDD-IITCLYVSVELDIVISGSKDGTCIFHT WD 3 3046-3085 -G--------------RYIRSLHHPSGCGLSKLVASRHGRVVFYADDDLSLHLYS WD 4 3086-3125 IN--------------GKHLAASESNG-RLNCVELSQCGEFLVCAGDHGQIVVRS WD 5 3129-3166 -L--------------EVISRYNGIGK-VIVSLTVTAEECFLA-GTKDGSLLVYS WD40 Template TG--------------ECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |