Input parameters:

  Query = CsaV3_2G028300 (Len=406)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G028300, Len=406):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFGNLFTDNTDLKIDDDGDFPTPTSDESPPIFSPWNQTYPFLKSPCFSEFQNGFVLHRNNNSLIGSLVREEGHVYSLAT 80  
WD40-rpts                                                                   (________________WD

Query       81 AGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVAPKNPSGGHRRAGTLPALRDILR 160 
WD40-rpts       1_______________)(________________WD 2________________)                        

Query      161 SSMNPQNYVVVGRNRSRLWFKHADAVSCLCLSEDKTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVAASNGLVI 240 
WD40-rpts                 (_________________WD 3_________________)   (________________WD 4_____

Query      241 TGSADGTAKVWRRQHEEENDATKHVLDQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAV 320 
WD40-rpts      ___________)           (_________________WD 5________________)(_________________

Query      321 LCLAAAGNSMVLSGGADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRVRCPDKREGQRWIAYSGSLDRSVKVWGI 400 
WD40-rpts      _WD 6__________________)     (______________________WD 7______________________) 

Query      401 SDGVGG 406 
WD40-rpts            

7 WD40-repeats found in QUERY=CsaV3_2G028300 (Len=406):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    62-98       7.07  406.91  0.00020       25.0%     50.17
  WD 2:  Seg  6    99-136      8.62  470.58  2.8e-05       22.5%     52.51
  WD 3:  Seg 13   172-211     10.60  552.63  2.2e-06       32.5%     54.65
  WD 4:  Seg 17   215-252      8.72  474.93  2.5e-05       37.5%     49.80
  WD 5:  Seg 21   264-302      8.76  476.72  2.3e-05       30.0%     54.92
  WD 6:  Seg 25   303-344      7.13  409.21  0.00019       30.0%     47.26
  WD 7:  Seg 29   350-399      7.87  439.82  7.3e-05       37.5%     51.77

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-98     -NSLI---GSLVREEGHVYS--LATAGEL-----------LYTGSDSKNIRVWK
   WD 2   99-136    NLKEF---TGFKSSSGLVKAIIIS--GEK-----------IFTGHQDGKIRVWK
   WD 3  172-211    GRNRS---RLWFKHADAVSCLCLSEDKTL-----------LYSSSWDKTLKVWR
   WD 4  215-252    -SKCL---ESLTVHDDAVNAVVAASNG-L-----------VITGSADGTAKVWR
   WD 5  264-302    -HVLD---QTLLKQDSAVTAVAVNAAGTV-----------VYCGSSDGLVNFWE
   WD 6  303-344    REKRLTYGGALKGHNLAVLCLAAAGNS-M-----------VLSGGADKTICVWR
   WD 7  350-399    -HTCV---SVLTGHTGPVKCLAVEEDRVRCPDKREGQRWIAYSGSLDRSVKVWG

   WD40 Template    TGECL---RTLSGHTSGVTSVSFSPDGKR-----------LVSGSEDGTIKVWD